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Crystallization

"Collective Variables for the Study ofCrystallization"

Tarak Karmakar, Michele Invernizzi, Valerio Rizzi, and Michele Parrinello

See (and cite): https://doi.org/10.1080/00268976.2021.1893848

All input files related to this work can be found in this archive.

NaCl

  • GROMACS input files - nacl_cry.gro, nacl_liq.gro, topol.top, na.itp, cl.itp, npt.mdp, topol.tpr

  • PLUMED input files - plumed.dat

CO2

  • GROMACS input files - co2_cry.gro, co2_liq.gro, topol.top, co2_epm2.itp, npt.mdp, topol.tpr

  • PLUMED input files - plumed.dat

SF-prof

  • Build Structure factor profile

Analysis

  • Google colab

PLUMED dev link -

Deep-LDA - https://github.com/luigibonati/data-driven-CVs

OPES - https://github.com/invemichele/opes

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