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Add --max-supercluster-size option#36

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TimD1 merged 14 commits intomasterfrom
td_max-supercluster-size
Apr 5, 2025
Merged

Add --max-supercluster-size option#36
TimD1 merged 14 commits intomasterfrom
td_max-supercluster-size

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@TimD1 TimD1 commented Mar 25, 2025

Problem

Solution

  • Implement an option for restricting maximum supercluster size by providing a --max-supercluster-size parameter
  • This can be used in combination with --cluster size 100 for fast clustering

To-Do

  • implement supercluster splitting
  • implement cluster splitting
  • fix memory errors on small dataset
  • fix bugs on small dataset
  • fix bugs on 3 WGS datasets

@TimD1 TimD1 force-pushed the td_max-supercluster-size branch from 7bdb006 to 86db18a Compare March 25, 2025 03:48
@TimD1 TimD1 marked this pull request as draft March 31, 2025 16:40
@TimD1 TimD1 marked this pull request as ready for review March 31, 2025 16:40
@TimD1 TimD1 self-assigned this Apr 5, 2025
@TimD1 TimD1 merged commit 9ed217f into master Apr 5, 2025
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