Conversation
# v0.2 ## Enhancement Allow support for heterogeneous definitions of reactions on vertices and edges. With the changes introduced it is now possible to define different reaction sets for different vertices/edges. The `vartojumps` and `jumptovars` dependency graph functions have been extended as well to deal with these cases. For an example see the `reaction_diffusion.jl` file. ## Minor changes and bug fixes Fixed license Changed affect! function signature to better reflect on the mutability of the input Allowed multidimensional vector states Included the bidirectional interactions in the `vtj` and `jtv` graphs ## Full commit history * LICENSE fix * Change of affect! function signature * Allow for the construction of a jumpset with multiple states per vertex * First version of heterogeneous reaction definitions on a network. * Fix vtj and write more tests for vtj and jtv * * Documentation update * jtv and vtj now also support heterogeneity in the number of vertex and edge reactions * jtv now always is sorted from low to high * Fixed bug where edge reactions are only counted once in var to jumps * * Fix vtj such that the edge reactions in two directions are included * Allow for a heterogeneous number of reactions defined on the edges and vertices in the vtj and jtv maps * Appended reaction_diffusion example with the use of vtj and jtv dependency graphs
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
2 participants
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
No description provided.