feat(config): Update .gitignore and add Sophia Script function reference

[Timpan4]

Modify .gitignore to comment out apps.json and prevent accidental commits.
Add comprehensive SOPHIA-FUNCTIONS-REFERENCE.md documenting Sophia Script
functions for Windows 11, covering privacy, telemetry, UI, and personalization
settings with detailed function descriptions.

Summary by CodeRabbit

• New Features

  • Added a customizable Windows 11 preset for privacy, UI, security, and performance tweaks.
  • Introduced an app list template for streamlined installation via the package manager.
  • Expanded connectivity to fetch content from GitHub and access temporary files.

• Documentation

  • Added a complete function reference for the customization script.
  • Introduced a comparison guide between installation automation and post-install customization.
  • Updated Getting Started with optional local testing steps and project structure.

• Chores

  • Updated task statuses and cleaned up ignore rule formatting.

[coderabbitai]

Caution

Review failed

The pull request is closed.

Walkthrough

Adds new AI permissions and reorders a settings JSON, adjusts a .gitignore comment, updates and adds documentation, introduces a comprehensive Sophia Script preset for Windows 11, adds a Winget apps template, updates a TODO checklist, and modifies a calculator method signature and global variable.

Changes

Cohort / File(s)	Summary
AI tooling config .claude/settings.local.json	Adds WebFetch permissions for github.com and raw.githubusercontent.com, grants Read(//tmp/**), retains WebSearch, and moves "outputStyle" after "permissions".
VCS ignore .gitignore	Moves inline comment for apps.json to its own line; ignore rule remains unchanged.
Documentation README.md, SOPHIA-FUNCTIONS-REFERENCE.md, docs/AUTOUNATTEND-VS-SOPHIA.md, TODO.md	README adds optional local Sophia Script testing and updates project structure. New full function reference for Sophia Script (v6.9.1). New doc comparing AutoUnattend.xml vs. Sophia Script. TODO checklist statuses updated.
Preset script Sophia-Preset.ps1	Adds a Windows 11 customization preset with organized privacy, UI, system, security, gaming, and app settings for Sophia Script; includes notes and verification section.
Winget template apps-template.json	Introduces Winget manifest template listing 19 package identifiers with pre-indexed source details; schema v2.0 with WinGetVersion 1.11.510.
Calculator updates src/calculator.py	Changes method signature: coderabbit_formula(x, y) → coderabbit_formula(x, y, z); renames global var: old_global_var → new_global_var.

Sequence Diagram(s)

sequenceDiagram
  autonumber
  actor User
  participant PS as PowerShell
  participant Sophia as Sophia Script
  participant OS as Windows Settings

  User->>PS: Run Sophia-Preset.ps1 (Admin)
  PS->>Sophia: Load functions/reference
  Sophia->>OS: Apply privacy/UI/system/security tweaks
  OS-->>Sophia: Settings applied / errors
  Sophia-->>PS: Summary of applied actions
  PS-->>User: Display results and any follow-up notes

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Estimated code review effort

🎯 3 (Moderate) | ⏱️ ~25 minutes

Poem

I hop through presets, ears held high,
Toggling switches under Windows’ sky.
Winget baskets filled, docs neatly aligned,
Permissions granted, configs refined.
One more parameter? Sure—z joins the crew.
Thump-thump—ship it! Fresh carrots, brand new. 🥕🐇

✨ Finishing touches

🧪 Generate unit tests (beta)

• Create PR with unit tests
• Post copyable unit tests in a comment
• Commit unit tests in branch ta-branch-1

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📜 Recent review details

Configuration used: CodeRabbit UI

Review profile: CHILL

Plan: Pro

📥 Commits

Reviewing files that changed from the base of the PR and between 559271e and 74bff0f.

📒 Files selected for processing (8)

• .claude/settings.local.json (1 hunks)
• .gitignore (1 hunks)
• README.md (2 hunks)
• SOPHIA-FUNCTIONS-REFERENCE.md (1 hunks)
• Sophia-Preset.ps1 (1 hunks)
• TODO.md (5 hunks)
• apps-template.json (1 hunks)
• docs/AUTOUNATTEND-VS-SOPHIA.md (1 hunks)

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