v0.5.3

0.5.3 — 2026-05-18

Bug Fixes

• Resolve clippy errors for Rust 1.95 and update test (@ShixiangWang)
• Include schema file within CLI crate to fix cargo package build (#42) (@Copilot) (#42)

Documentation

• Add missing documentation for optional rules, directory input, and E010 test (@ShixiangWang)
• Document new features in README (@ShixiangWang)
• Update CHANGELOG for new features (@ShixiangWang)
• Add implementation plan for oxo-flow optimizations (@ShixiangWang)
• Add oxo-flow optimizations design spec (@ShixiangWang)
• Add circRNA pipeline implementation plan (@ShixiangWang)
• Add circRNA pipeline design specification (@ShixiangWang)
• Update CHANGELOG.md for v0.5.2 [skip ci] (@github-actions[bot])

Features

• rule: Add Dir variant to FilePatterns for directory input (@ShixiangWang)
• executor: Implement optional rule skip logic (@ShixiangWang)
• rule: Add optional field for skip-on-missing behavior (@ShixiangWang)
• format: Add validation for undefined env_group references (@ShixiangWang)
• config: Add env_groups for shared environments (@ShixiangWang)
• executor: Add auto-scaling helper functions (@ShixiangWang)
• rule: Add AutoScale type for resource auto-scaling (@ShixiangWang)
• config: Add reference_dir field with auto-derivation (@ShixiangWang)
• cli: Implement --as-include validation mode (@ShixiangWang)
• cli: Add --as-include flag to validate command (@ShixiangWang)
• core: Enhance clinical workflow support and permissive wildcard expansion (@ShixiangWang)

Maintenance

• Bump version to 0.5.3 [skip ci] (@github-actions[bot])
• Fix clippy warnings and ensure CI passes (@ShixiangWang)

Testing

• config: Add tests for reference_dir derivation (@ShixiangWang)
• cli: Add tests for --as-include validation (@ShixiangWang)