toxvaldbstage v9.7.0

Release for toxvaldbstage repo to accompany the ToxValDB v9.7.0 database release. Summary files and the full MySQL database download are available publicly in this FigShare Dataset and this Zenodo Dataset. For a detailed description of database development, see Wall et al. 2025 (DOI 10.1016/j.comtox.2025.100365).

What's Changed

• TOXVAL-897 by @jlangley7 in #302
• TOXVAL-917 by @taywll252 in #311
• TOXVAL-943 by @taywll252 in #313
• TOXVAL-944 by @taywll252 in #314
• TOXVAL-945 by @taywll252 in #315
• TOXVAL-945 by @taywll252 in #327
• TOXVAL-909 by @jlangley7 in #307
• TOXVAL-908 by @jlangley7 in #308
• TOXVAL-919 by @taywll252 in #312
• TOXVAL-911 by @taywll252 in #316
• TOXVAL-916 by @taywll252 in #317
• TOXVAL-918 by @taywll252 in #318
• TOXVAL-920 by @taywll252 in #319
• TOXVAL-921 by @taywll252 in #320
• TOXVAL-922 by @taywll252 in #321
• TOXVAL-926 by @taywll252 in #322
• TOXVAL-927 by @taywll252 in #323
• TOXVAL-924 by @taywll252 in #324
• TOXVAL-949 by @taywll252 in #325
• TOXVAL-950 by @taywll252 in #326
• v9.7.0 Document Cataloging by @taywll252 in #328
• v9.7.0 Release Prep by @taywll252 in #330

Full Changelog: v9.6.2...v9.7.0

toxvaldbstage v9.6.2

Release for toxvaldbstage repo to accompany the ToxValDB v9.6.2 database release. Summary files and the full MySQL database download are available publicly in this FigShare Dataset and this Zenodo Dataset. For a detailed description of database development, see Wall et al. 2025 (DOI 10.1016/j.comtox.2025.100365).

2025-07-24

Minor change to code related to v9.6.2 data release and refresh due to updated DCAP input file - 87f93fe

What's Changed

• TOXVAL-912 by @taywll252 in #309
• TOXVAL-913 by @taywll252 in #310

Full Changelog: v9.6.1...v9.6.2

toxvaldbstage v9.6.1

Release for toxvaldbstage repo to accompany the ToxValDB v9.6.1 database release. Summary files and the full MySQL database download are available publicly in this FigShare Dataset and this Zenodo Dataset.

What's Changed

• TOXVAL-419 by @jhope0101 in #295
• TOXVAL-882 by @taywll252 in #296
• TOXVAL-890 by @taywll252 in #297
• TOXVAL-875 by @taywll252 in #299
• TOXVAL-882 by @jhope0101 in #300
• TOXVAL-894 by @taywll252 in #298
• TOXVAL-900 by @taywll252 in #301
• TOXVAL-885 by @taywll252 in #303
• TOXVAL-666 by @taywll252 in #305

Full Changelog: v9.6.0...v9.6.1

toxvaldbstage v9.6.0 DCAP

Release for toxvaldbstage repo to accompany DCAP manuscript analysis.

What's Changed

• TOXVAL-384 by @jhope0101 in #282
• TOXVAL-422 by @jhope0101 in #279
• TOXVAL-419 by @jhope0101 in #280
• TOXVAL-389 by @jhope0101 in #281
• TOXVAL-405 by @jhope0101 in #283
• TOXVAL-404 by @jhope0101 in #284
• TOXVAL-799 by @jhope0101 in #285
• TOXVAL-868 by @jlangley7 in #288
• TOXVAL-766 by @taywll252 in #286
• TOXVAL-869 by @taywll252 in #289
• TOXVAL-389 by @jhope0101 in #291
• TOXVAL-415 by @jhope0101 in #290
• TOXVAL-799 by @jhope0101 in #287
• TOXVAL-870 by @jhope0101 in #292
• TOXVAL-874 by @jhope0101 in #294

New Contributors

• @jlangley7 made their first contribution in #288

Full Changelog: v9.5...v9.6.0

toxvaldbstage v9.5 Release

Release for toxvaldbstage repo to accompany the ToxValDB v9.5 database release. Summary files and the full MySQL database download are available publicly (no account required) in this CCTE Clowder Dataset.

What's Changed

• TOXVAL-385 by @taywll252 in #2
• TOXVAL-380 by @taywll252 in #3
• Splitting repo from toxvaldbmain by @taywll252 in #4
• Toxval 334 by @taywll252 in #5
• TOXVAL-439 by @taywll252 in #7
• TOXVAL-385 by @taywll252 in #8
• TOXVAL-447 by @taywll252 in #10
• Rework of doe_benchmark based on toxvaldbmain load logic by @taywll252 in #11
• TOXVAL-461 by @taywll252 in #13
• TOXVAL-452 by @brito-anthony in #14
• TOXVAL-453 by @brito-anthony in #15
• TOXVAL-359 by @taywll252 in #16
• TOXVAL-362 by @taywll252 in #9
• TOXVAL-435 by @brito-anthony in #6
• TOXVAL-468 by @taywll252 in #17
• TOXVAL-452 and 453 - Wrap-up by @taywll252 in #18
• TOXVAL-362 by @taywll252 in #23
• TOXVAL-360 by @taywll252 in #24
• TOXVAL-471 by @taywll252 in #25
• TOXVAL-365 by @brito-anthony in #22
• TOXVAL-351 by @taywll252 in #26
• TOXVAL-318 by @taywll252 in #27
• TOXVAL-368 by @brito-anthony in #21
• TOXVAL-371 by @brito-anthony in #20
• TOXVAL-374 by @brito-anthony in #19
• TOXVAL-465 by @taywll252 in #29
• TOXVAL-386 by @mmille16 in #30
• TOXVAL-486 by @taywll252 in #28
• updated set_clowder_id_lineage.R switch statement to include clowder … by @mmille16 in #32
• TOXVAL-372- Updated switch statements to include EPA OW NRWQC-HHC by @jhope0101 in #34
• TOXVAL-369: Updated switch statements to include source EPA OW NRWQC-ALC by @jhope0101 in #35
• TOXVAL-515 by @taywll252 in #37
• Toxval 443 by @mgroover1 in #36
• TOXVAL-420 by @taywll252 in #39
• ToxVal-375: Updated switch statements to include source epa ow opp alb by @jhope0101 in #38
• TOXVAL-470: Updated the switch statements to include the source ATSDR MRLs 2023 by @jhope0101 in #40
• TOXVAL-408: Updated the switch statements to include the updated IRIS 2023 documents by @jhope0101 in #42
• TOXVAL-510 by @taywll252 in #47
• TOXVAL-374 by @taywll252 in #49
• TOXVAL-510 by @taywll252 in #50
• TOXVAL-413 by @jhope0101 in #43
• TOXVAL-426 by @jhope0101 in #44
• TOXVAL-420 by @jhope0101 in #45
• TOXVAL-522 by @jhope0101 in #48
• Toxval-463 by @mgroover1 in #41
• TOXVAL-380 Update by @taywll252 in #51
• TOXVAL-521 hashing_cols system by @taywll252 in #52
• HotFix PENN cataloging by @taywll252 in #53
• HotFix: printCurrentFunction handle NULL input by @taywll252 in #54
• TOXVAL-350 by @jhope0101 in #46
• TOXVAL-372 by @jhope0101 in #56
• TOXVAL-415 by @jhope0101 in #57
• TOXVAL-410 by @jhope0101 in #58
• TOXVAL-443 by @mgroover1 in #59
• TOXVAL-514 by @swinter01 in #60
• TOXVAL-427 by @jhope0101 in #62
• TOXVAL-428 by @jhope0101 in #63
• TOXVAL-429 by @jhope0101 in #64
• TOXVAL-388 by @swinter01 in #65
• TOXVAL-362 by @taywll252 in #66
• TOXVAL-548 by @taywll252 in #71
• TOXVAL-526 by @swinter01 in #68
• TOXVAL-534 by @mgroover1 in #69
• TOXVAL-525 by @swinter01 in #61
• TOXVAL-514 by @taywll252 in #67
• TOXVAL-505 by @mgroover1 in #75
• TOXVAL-505 HotFix by @taywll252 in #76
• TOXVAL-541 ATSDR MRLs Sep 2023 by @taywll252 in #74
• TOXVAL-524 by @jhope0101 in #55
• TOXVAL-527 by @swinter01 in #72
• TOXVAL-542 by @jhope0101 in #78
• TOXVAL-349 by @brito-anthony in #12
• TOXVAL-493 by @taywll252 in #31
• TOXVAL-443 by @taywll252 in #70
• TOXVAL-512 by @swinter01 in #77
• TOXVAL-517 by @swinter01 in #80
• TOXVAL-499 by @swinter01 in #81
• TOXVAL-499 DOD MEG Import by @taywll252 in #82
• USGS HBSL - Update set_clowder_id_lineage.R by @taywll252 in #83
• TOXVAL-555 by @swinter01 in #84
• TOXVAL-513 by @swinter01 in #85
• TOXVAL-421 by @jhope0101 in #86
• TOXVAL-538 by @mgroover1 in #87
• TOXVAL-472 by @swinter01 in #89
• TOXVAL-513 by @swinter01 in #90
• TOXVAL-517 by @swinter01 in #92
• TOXVAL-525 by @swinter01 in #93
• TOXVAL-530 by @mgroover1 in #94
• TOXVAL-559 by @swinter01 in #91
• TOXVAL-545 by @mgroover1 in #79
• TOXVAL-536 by @swinter01 in #98
• TOXVAL-463 by @mgroover1 in #88
• TOXVAL-558 by @mgroover1 in #100
• TOXVAL-544 by @swinter01 in #95
• TOXVAL-545 by @mgroover1 in #102
• TOXVAL-535 by @mgroover1 in #73
• TOXVAL-561 by @swinter01 in #97
• TOXVAL-553 by @swinter01 in #96
• TOXVAL-511 by @swinter01 in #99
• TOXVAL-564 by @swinter01 in #103
• TOXVAL-574 by @swinter01 in #108
• TOXVAL-499 by @swinter01 in #110
• TOXVAL-553 by @swinter01 in #109
• TOXVAL-564 by @swinter01 in #105
• TOXVAL-567 DOE PAC by @taywll252 in #113
• TOXVAL-575 by @swinter01 in #112
• TOXVAL-586 EPA OW OPP ALB by @taywll252 in #117
• TOXVAL-575 by @swinter01 in #116
• TOXVAL-578 by @swinter01 in #114
• TOXVAL-587 by @mgroover1 in #118
• TOXVAL-450 by @swinter01 in #101
• TOXVAL-558 qc_sampling by @taywll252 in #119
• TOXVAL-558 qc_sampling fix by @taywll252 in #120
• TOXVAL-513 DOD ERED QC Fix by @taywll252 in #123
• TOXVAL-559 Penn Dep ToxValues QC Fix by @taywll252 in #124
• TOXVAL-514 QC fixes b...