In this notebook series, we explore how different data analysis strategies affect the outcome of a proteomics experiment based on isobaric labeling and mass spectrometry. Start by reading the intro, and then pick a notebook of your interest!
If you wish to see the notebooks' underlying R code, visit the GitHub source repository.
- Unit scale strategy comparison
- Summarization strategy comparisons
- Normalization strategy comparisons
- Differential Expression Analysis (DEA) strategy comparisons
- Unit scale strategy comparison
- Summarization strategy comparisons
- Normalization strategy comparisons
- Differential Expression Analysis (DEA) strategy comparisons
Enjoy the read!
Piotr Prostko & Joris Van Houtven