MedSAM for bleeding area

Introduce

Environment

Run the prepare.sh to auto-create the virtual environment for classification and instance segmentation:

bash -i prepare_env.sh

⚠️ Since the environment of classification and instance segmentation will be installed separate, the i in bash -i prepare_env.sh is necessary.

1.1 Classification

Download the testing classification data from here. Unzip the classification_data.zip and classification_weight.zip, moving them into classification folder.

YOUR_PATH\AUTO-WCEBLEEDGEN-CHALLENGE-VERSION-V2\CLASSIFICATION
├───config
│   ├───efficientnet
│   └───_base_
│       ├───datasets
│       │   └───pipelines
│       ├───models
│       └───schedules
├───data <- *From classificaiton_data.zip*
│   └───WCEBleedGen_v2
│       ├───test1
│       │   ├───bleeding
│       │   └───non-bleeding
│       ├───test2
│       │   ├───bleeding
│       │   └───non-bleeding
│       ├───train
│       │   ├───bleeding
│       │   └───non-bleeding
│       └───val
│           ├───bleeding
│           └───non-bleeding
├───datasets
│   └───pipelines
├───tools
└───weight <- *From classificaiton_weight.zip*