Release 2026.2.1#730
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- CLINGEN_CACHE_WARMING_CONCURRENCY and RECODER_CONCURRENCY can now be tuned via environment variables without redeploying; both default to 5, preserving existing behaviour
VEP jobs were timing out before completing on large score sets. - ARQ hard-kill timeout raised from 2 h to 3 h - Stall-detection threshold raised from 90 min to 150 min, preserving the 30-minute buffer below the ARQ timeout
…T DO NOTHING The prior upsert used db.add() after a SELECT check. Because db.add() stages objects without flushing, a subsequent SELECT within the same transaction still found no committed row — so processing two alleles that share a PA produced duplicate pending inserts, crashing at the next update_progress commit with a UniqueViolation. Switching to a batched INSERT ... ON CONFLICT DO NOTHING makes the write atomic and idempotent within a transaction. Also adds: - Direct unit tests for upsert_variant_translations covering deduplication, partial overlap, and cross-call idempotency - Regression test for the multi-allele shared-PA scenario
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Patch release with incremental worker improvements: