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Expand MATLAB-Python bridge documentation with comprehensive method mappings#35

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stevevanhooser merged 3 commits into
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claude/find-missing-bridge-coverage-Mdkt0
Mar 13, 2026
Merged

Expand MATLAB-Python bridge documentation with comprehensive method mappings#35
stevevanhooser merged 3 commits into
mainfrom
claude/find-missing-bridge-coverage-Mdkt0

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Summary

This PR significantly expands the MATLAB-to-Python bridge documentation by adding detailed method mappings for core NDI classes (Ido, DocumentPersistence, Document, and Query). It also removes the now-redundant MATLAB_MAPPING.md file in favor of the more structured YAML-based bridge definitions.

Key Changes

  • Ido class: Added mappings for unique_id(), is_valid(), and eq() methods with decision logs explaining exact matches and synchronization details.

  • DocumentPersistence interface: Added load_element_doc() and document_id() methods to the interface specification.

  • Document class: Significantly expanded with 40+ new method mappings including:

    • Identity methods: id(), session_id(), doc_unique_id()
    • Dependency management: dependency(), dependency_value(), dependency_value_n(), add_dependency_value_n(), remove_dependency_value_n()
    • File management: has_files(), add_file(), remove_file(), current_file_list()
    • Document class information: doc_class(), doc_superclass(), doc_isa()
    • Serialization: write(), setproperties(), validate()
    • Conversion: to_table(), to_dict(), to_json()
    • Merging: plus() (mapped to __add__)
    • Static methods: find_doc_by_id(), find_newest(), read_blank_definition()
    • Added section comments organizing methods by category (Constructor, Identity, Session, Dependency Management, File Management, etc.)
  • Query class: Added comprehensive method mappings including:

    • Computed properties: field, operator, value, queries
    • Comparison operators: eq(), ne(), lt(), le(), gt(), ge() (mapped to Python magic methods)
    • Logical operators: and(), or(), not() (mapped to __and__, __or__, __invert__)
    • String/pattern methods: contains(), match(), equals()
    • Explicit comparison methods: less_than(), less_than_or_equal_to(), greater_than(), greater_than_or_equal_to()
    • Field existence: has_field(), has_member()
    • Static factory methods: all(), none(), from_search()
    • Added section comments organizing methods by type
  • Database class: Added convenience methods from the didsqlite subclass:

    • update(), add_or_replace(), find_by_id(), numdocs()
    • find_depends_on(), find_dependencies()
    • add_many(), remove_many(), get_binary_path()
  • GUI ProgressDisplay class: Added methods setProgressTracker(), getProgressValue(), getProgressTitle(), formatMessage()

  • Removed: MATLAB_MAPPING.md file (554 lines) - functionality now consolidated into structured YAML bridge definitions

Implementation Details

  • All new method entries include:

    • Complete input/output argument specifications with type mappings
    • Decision logs explaining the mapping rationale and synchronization date (2026-03-13)
    • Proper handling of optional parameters with defaults
    • Mapping of MATLAB operator overloads to Python magic methods (e.g., ==__eq__)
  • Methods are organized with section comments for better readability and maintainability

  • Synchronization date consistently set to 2026-03-13 across all new entries

  • Maintains consistency with existing bridge documentation patterns

https://claude.ai/code/session_01XFmUSUpA1PAwxpDnczwGAv

claude added 3 commits March 13, 2026 15:07
- Delete MATLAB_MAPPING.md: superseded by per-package bridge YAML files
  which provide richer detail (argument types, decision logs, sync hashes)
- Add missing entries to gui/component bridge:
  - ProgressMonitor: setProgressTracker, getProgressValue, getProgressTitle,
    formatMessage methods
  - ProgressTracker: DumpFilePath property
  - AsynchProgressTracker: getAsynchTaskProgress static method

https://claude.ai/code/session_01XFmUSUpA1PAwxpDnczwGAv
…asses

Core bridge (ndi_matlab_python_bridge.yaml):
- Ido: add unique_id (static), is_valid (static), eq methods
- DocumentService: add load_element_doc, document_id methods
- Document: add 18 missing methods including dependency management
  (dependency, dependency_value, dependency_value_n, add/remove_dependency_value_n),
  file management (has_files, add_file, remove_file, current_file_list),
  class info (doc_class, doc_superclass, doc_isa), serialization
  (write, setproperties, validate, to_table, to_dict, to_json, plus),
  and static methods (find_doc_by_id, find_newest, read_blank_definition)
- Query: add 25+ missing entries including operator overloads (eq, ne, lt,
  le, gt, ge, and, or, not), string methods (contains, match, equals),
  comparison methods, field existence (has_field, has_member), static
  factories (all, none, from_search), serialization (to_searchstructure,
  to_search_structure), and computed properties (field, operator, value,
  queries)

Database bridge (ndi_matlab_python_bridge_database.yaml):
- Add 9 individual method entries for Python convenience methods previously
  only noted in a comment: update, add_or_replace, find_by_id, numdocs,
  find_depends_on, find_dependencies, add_many, remove_many, get_binary_path

https://claude.ai/code/session_01XFmUSUpA1PAwxpDnczwGAv
Add not_applicable entries for MATLAB functions intentionally not ported:
- ndi_matlab_python_bridge.yaml: ndi.data.evaluate_fitcurve, ndi.setup, ndi.docs
- ndi_matlab_python_bridge_database_fun.yaml: 13 database.fun utilities
  (GenBank parsers, NIF brain areas, plotinteractivedocgraph, table I/O, etc.)

https://claude.ai/code/session_01XFmUSUpA1PAwxpDnczwGAv
@stevevanhooser stevevanhooser merged commit eb890d7 into main Mar 13, 2026
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@stevevanhooser stevevanhooser deleted the claude/find-missing-bridge-coverage-Mdkt0 branch March 13, 2026 16:11
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2 participants