Skip to content

workflow rerun again and again #48

@wangjiawen2013

Description

@wangjiawen2013

Hi, here is a toy code I wrote (test.smk):

rule all:
input:
"/home/wangjw/data/work/flask/b.txt"

rule copy1:
input:
file = directory("/home/wangjw/data/work/flask")
output:
file = "data1/a.txt"
shell:
"cp {input.file}/a.txt {output.file}"

rule copy2:
input:
file = "data1/a.txt"
output:
file = "/home/wangjw/data/work/flask/b.txt"
shell:
"cp {input.file} {output.file}"

then I run snakemake -j 1 -s test.smk, the workflow will run again each time I perform "snakemake -j 1 -s test.smk", although all the files have been created.

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions