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[NET-192] Diagnostic Plot for permutation histogram fix #31

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Merged
pollaro merged 1 commit into from
Jun 7, 2024
Merged

[NET-192] Diagnostic Plot for permutation histogram fix #31

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2 changes: 1 addition & 1 deletion +nla/+net/+result/+plot/PermutationTestPlotter.m
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Original file line number Diff line number Diff line change
Expand Up @@ -59,7 +59,7 @@ function plotProbabilityVsNetworkSize(obj, parameters, axes, plot_title)
function plotProbabilityHistogram(obj, axes, histogram_data, statistic_input, no_permutations_network_result, test_method,...
probability_max)
import nla.HistBin

empirical_fdr = cumsum(double(histogram_data) ./ sum(histogram_data));

[~, minimum_index] = min(abs(probability_max - empirical_fdr));
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4 changes: 2 additions & 2 deletions +nla/+net/+result/NetworkTestResult.m
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Expand Up @@ -342,7 +342,7 @@ function fullConnectomePlotting(obj, network_atlas, edge_test_options, edge_test
if obj.is_noncorrelation_input
plot_figure = createFigure(1000, 900);
plotter.plotProbabilityHistogram(subplot(2,2,2), p_value_histogram, obj.full_connectome.p_value.v,...
obj.permutation_results.p_value_permutations.v(:,1), obj.test_display_name, updated_test_options.prob_max);
obj.no_permutations.p_value.v, obj.test_display_name, updated_test_options.prob_max);
plotter.plotProbabilityVsNetworkSize(p_value_vs_network_size_parameters, subplot(2,2,3),...
"Non-permuted P-values vs. Network-Pair Size");
plotter.plotProbabilityVsNetworkSize(full_connectome_p_value_vs_network_size_parameters, subplot(2,2,4),...
Expand All @@ -355,7 +355,7 @@ function fullConnectomePlotting(obj, network_atlas, edge_test_options, edge_test
plotter.plotProbabilityVsNetworkSize(full_connectome_p_value_vs_network_size_parameters, subplot(2,3,6),...
"Permuted P-values vs. Net-Pair Size");
plotter.plotProbabilityHistogram(subplot(2,3,4), p_value_histogram, obj.full_connectome.p_value.v,...
obj.permutation_results.p_value_permutations.v(:,1), obj.test_display_name, updated_test_options.prob_max);
obj.no_permutations.p_value.v, obj.test_display_name, updated_test_options.prob_max);
x_coordinate = 75;
end

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