refactor(commands): consolidate 78 commands → 12 focused commands

[Wolfvin]

Context

CodeLens saat ini punya 78 commands. Mayoritas broken, tidak teruji, atau duplikat satu sama lain. Ini bukan fitur — ini graveyard of unfinished ideas.

Test batch yang dilakukan mengkonfirmasi:

• Beberapa commands tidak exist tapi masih muncul di --help (god-module, routes, delta, guard, llm, memory)
• Beberapa crash dengan input normal (benchmark, ownership, fix, lsp-status, self-analyze)
• Mayoritas sisanya tidak bisa diverifikasi hasilnya benar

Tujuan

Konsolidasi dari 78 ke 12 command focused dengan cara merge/absorb command yang overlap.

Mapping Konsolidasi (12 command baru)

Command Baru	Menyerap Command Lama
scan	scan, init, rescan
search	symbols, semantic-query, query-graph, search
context	context, outline, trace, orient
deps	affected, dependents, circular, import-snapshot
audit	dead-code, complexity, smell, staleness, god-module, perf-hint, side-effect
security	secrets, vuln-scan, taint, binary-scan, regex-audit
summary	summary, dashboard, arch-metrics, architecture
impact	impact, diff, dataflow
api-map	api-map, routes, graph-schema
doctor	doctor, env-check, lsp-status
history	history, ownership, git-status
graph	query-graph (raw Cypher, untuk power user)

Commands yang Di-drop Total

Commands berikut di-remove karena broken, tidak ada value, atau scope terlalu jauh dari core use case:

adr, a11y, handbook, ask, serve, sessions, watch, registry-validate, rule-test, rule-validate, artifact-scan, css-deep, debug-leak, detect, export-snapshot, refactor-safe, resolve-types, stack-trace, migrate, benchmark, fix, self-analyze, lsp-status, delta, guard, llm, memory (sebagai standalone command)

Cara Implementasi per Command Baru

Setiap command baru harus:

1. Punya --check flag untuk pilih sub-analysis, atau default jalankan semua
2. Tetap terima --format compact / --format json
3. Output stats yang konsisten: {"s":"ok", "st":{...}, "r":[...]}

Contoh penggunaan:

codelens audit <workspace>                       # semua checks
codelens audit <workspace> --check dead-code     # hanya dead-code
codelens audit <workspace> --check complexity,smell  # pilih beberapa

codelens search <workspace> "google auth"             # semantic search (default)
codelens search <workspace> "google auth" --mode symbol  # exact symbol
codelens search <workspace> "MATCH (n) WHERE n.id CONTAINS x" --mode graph  # Cypher

codelens deps <workspace> --check circular       # circular deps
codelens deps auth/foo.ts --check affected       # affected files
codelens deps auth/foo.ts --check dependents     # direct dependents

Definition of Done

1. Semua 12 command baru berfungsi saat di-run di codebase test: fought/extension_source/ts
2. Semua command lama yang di-absorb masih bisa dipanggil tapi print deprecation warning + redirect ke command baru (backward compat 1 versi)
3. --help hanya menampilkan 12 command baru (command lama tersembunyi dari help, tapi masih bisa dipanggil)
4. README.md diupdate dengan tabel mapping baru
5. File .py di scripts/commands/ untuk command yang di-drop total dihapus

Checklist Laporan Worker

• List 12 command baru yang sudah diimplementasi + contoh output masing-masing
• List command lama yang masih ada sebagai deprecated aliases
• List command yang dihapus total
• Hasil codelens --help (hanya 12 command yang muncul)
• Satu test run per command baru di codebase fought/extension_source/ts

[Wolfvin]

BLOCKED: issue body kehilangan semua nama command

Worker: Executor·Pragmatist
Timestamp: 2026-07-04T04:25:00Z

Saya sudah clone repo + baca CONTEXT.md + cek PR open/merged 24 jam terakhir (tidak ada collision). Tapi tidak bisa mulai kerja karena body issue ini kehilangan semua nama command yang seharusnya ada di dalam backticks.

Bukti (raw body dari GitHub API, bukan artifact rendering):

1. Mapping Konsolidasi — kolom "Command Baru" kosong semua:

| Command Baru | Menyerap Command Lama |
|---|---|
|  | scan, init, rescan |              <- nama command baru hilang
|  | symbols, semantic-query, query-graph, search |
|  | context, outline, trace, orient |
... (12 baris, semua kolom pertama kosong)

2. "Commands yang Di-drop Total" — hanya koma tanpa nama:

, , , , , , , , , , , , , , , , , , , , , , , , , ,  (sebagai standalone command)

3. "Cara Implementasi per Command Baru" — flag name hilang:

1. Punya  flag untuk pilih sub-analysis   <- nama flag hilang
2. Tetap terima  / 
3. Output  (stats) yang konsisten: 

Yang saya butuhkan dari BOS

Tolong re-create atau edit issue ini dengan nama command yang benar di:

1. 12 sel "Command Baru" di mapping table
2. List "Commands yang Di-drop Total" (currently 28 placeholder koma)
3. Nama flag di poin "Cara Implementasi" (sub-analysis flag name, positional arg names, stats field name)

Setelah issue body lengkap, worker bisa langsung mulai. Saya tidak claim issue ini sampai body-nya fix — supaya worker lain tidak collide.

Pemeriksaan yang sudah dilakukan

• Clone repo + sparse checkout (WORKERS.md, scripts, tests, README.md, SKILL.md)
• WORKERS.md tidak ada di root repo CodeLens (sudah diverifikasi via git ls-tree -r main)
• Baca _skills/pre-flight/SKILL.md + _skills/issue-workflow/SKILL.md + context-snapshot/CodeLens/CONTEXT.md
• Cek open PRs: 0 open
• Cek merged PRs 24 jam terakhir: 15 PR merged, semua spesifik ke command tertentu (affected, semantic-query, query-graph, staleness, dll) — tidak ada yang menyentuh area command registry konsolidasi
• Mulai kerja: BLOCKED

Catatan tambahan soal scope

Ini refactor sangat besar (78→12 commands, dengan deprecation layer + test per command baru + README rewrite + cleanup file). Sekali 12 nama command final diputuskan, estimasi:

• ~12 file command baru di scripts/commands/
• Deprecation redirect layer di codelens.py dispatch
• Update COMMAND_REGISTRY ordering / hidden flag untuk 66 command lama
• Hapus ~28 file command yang di-drop
• Update README.md mapping
• Test per command baru

Mau lanjutkan begitu body issue di-fix.

[Wolfvin]

Mengerjakan issue ini -- 2026-07-04T04:35:00Z

Identity: Executor·Pragmatist

Plan:

1. Add hidden + deprecated_alias_for fields to COMMAND_REGISTRY
2. 12 new umbrella commands (8 existing + 4 new: deps, audit, security, graph)
3. Absorbed commands → hidden + deprecation warning
4. Drop-total files deleted (26 files, lsp_status kept as utility for doctor)
5. --help & --command-count show only 12
6. README + sync_command_count + tests

Catatan: 13 commands (analyze, check, config-drift, deps-audit, entrypoints, lsp, list, missing-refs, plugin, query, state-map, test-map, type-infer) tidak ada di absorb list maupun drop list. Akan saya hidden (tidak muncul di --help, masih callable) dan flag di PR description untuk BOS putuskan.

[Wolfvin]

PR siap review

PR: #196 — refactor(commands): consolidate 78 commands → 12 focused umbrella commands (closes #195)
Branch: refactor/issue-195-consolidate-commands
Summary: Consolidated 78 legacy commands into 12 focused umbrella commands (scan, search, context, deps, audit, security, summary, impact, api-map, doctor, history, graph) with --check/--mode dispatch. Absorbed commands remain callable as hidden deprecated aliases that print a redirect warning. 25 drop-total files deleted, 17 new tests added, README + sync_command_count updated (78→12, MCP 76→12).
Tests: 17 new tests pass (test_issue195_consolidation.py), 4 command_count tests pass, 2 command_registry tests pass, 3 migrate tests pass. Pre-existing failures (test_formatters_phase2, test_universal_grammar_loader, test_confidence) verified to fail on clean main too — not from this PR.

Findings (needs BOS decision)

1. 13 commands not in absorb nor drop list (analyze, check, config-drift, deps-audit, entrypoints, lsp, list, missing-refs, plugin, query, state-map, test-map, type-infer) — marked hidden pending BOS decision. check is the CI quality gate so I kept it functional (hidden but callable) rather than deleting.
2. lsp-status + migrate kept as utility modules — lsp_status.py needed by doctor --check lsp-status; migrate.py needed by existing tests that import cmd_migrate. Both unregistered as commands.
3. serve (MCP server) dropped per issue — mcp_server.py module still exists, MCP tool count is now 12. If MCP server CLI access is still needed, can be re-exposed in follow-up.

Detail lengkap di PR description: #196

[Wolfvin]

Resolved via PR #196. 78 → 12 umbrella commands merged to main.

Post-merge fix needed: README line 56 static + -44 dynamic math error (tracked separately).