XPRESSpipe-v0.1.0b1

Beta version for first round user testing
Most aspects functional, still waiting on thorough test cases and edge testing
Everything involved directly in pipeline is working, but in some cases, running steps alone can be buggy still

Major Updates:

• No SAM output, unsorted BAM gets parsed for unique maps, sorted, and indexed
• Outputs deduplicated BAM files for downstream processing
• Counts to BAM file where duplicates were removed
• Implemented complexity via dupRadar and plots summaries
• Implemented homebrew metagene and periodicity analysis
• Implemented modify GTF features

Several other minor updates