XPRESSpipe-v0.4.0

• Introduced rRNA depletion during alignment step (previously could only do so during the quantification step)
• Expanded periodicity analysis to cover more holistic P-site analysis (report codon usage stats). The submodule previously called periodicity is now called by p_sites
• Allow for setting upper limit threshold for read length during pre-processing reads and P-site analysis (previously only a lower limit was available)
• All documentation associated with this changes has been updated.