Tools

Tools

Preparation of metabolomics data and metadata

Metabolomics data has been extracted from Supplementary Table S1 from Su et al., 2020. Metabolite names were mapped to ChEBI identifiers and omics data and features metadata files in .csv format were created.

The R notebook used to execute the different preparation steps can be found in tools/Su_2020_prepare_metabolomics. It contains descriptions of each preparation step. A rendered .html is also available. A detailed description of the generated output files is available in the Metabolomics section of Data and metadata. Additional information on setting up the R environment is available in the README file.