scviva-tools v0.1.8

What's Changed

• reduce MPS tests memory footprint by @ori-kron-wis in #45
• docs: Document full public API and expose real accessor signatures by @ori-kron-wis in #53
• fix(destvi): VampPrior from a normal-prior CondSCVI and on GPU/MPS devices by @ori-kron-wis in #56
• chore: credit Matin Gerami for destvi VampPrior fix (7a9c57f) by @ori-kron-wis in #59
• fix: Make pooch and igraph optional via @Dependencies decorator . by @ori-kron-wis in #60
• docs: expand installation guide, add Google Colab support and RAPIDS fallback to tutorials by @ori-kron-wis in #61
• release: v0.1.8 by @ori-kron-wis in #64

Full Changelog: v0.1.7...v0.1.8

scviva-tools v0.1.7

What's Changed

• docs: preprocessing script for scviva by @ori-kron-wis in #21
• ci: Updated github workflows for python 3.14 by @ori-kron-wis in #22
• Feat: adding DiagVI by @ori-kron-wis in #23
• fix: updating upstream scvi-tools by @ori-kron-wis in #25
• docs: enable warnings-as-errors and fix resulting docs build failures by @ori-kron-wis in #27
• reformat: Update with scverse cookicutter v0.8 by @ori-kron-wis in #28
• chore(deps): bump the actions-deps group with 5 updates by @dependabot[bot] in #30
• chore(deps): bump pypa/gh-action-pypi-publish from 1.14.1 to 1.14.2 in the actions-deps group by @dependabot[bot] in #35
• chore(deps): bump astral-sh/setup-uv from 9.0.0 to 10.0.1 in the actions-deps group by @dependabot[bot] in #39
• chore(deps): bump re-actors/alls-green from 1.2.2 to 1.3.0 in the actions-deps group by @dependabot[bot] in #41
• Port VISION (visionpy) into scviva-tools as scviva.tools.vision by @oieretxezarreta in #19
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci[bot] in #43
• docs: change logo by @ori-kron-wis in #44
• Merge main (VISION) into MPS support branch, resolve raw-view-fix by @ori-kron-wis in #42

New Contributors

• @dependabot[bot] made their first contribution in #30
• @oieretxezarreta made their first contribution in #19

Full Changelog: v0.1.6...v0.1.7

scviva-tools v0.1.6

What's Changed

• tests: test for CUDA by @ori-kron-wis in #17
• fix: harreman for pandas 3 by @ori-kron-wis in #20

New Contributors

Full Changelog: v0.1.5...v0.1.6

scviva-tools v0.1.5

Full Changelog: v0.1.4...v0.1.5

scviva-tools v0.1.4

What's Changed (first release to PyPi)

• feat: add spatialvi-tools v0.1.0 — DestVI, ResolVI, and scVIVA with shared spatial base infrastructure by @ori-kron-wis in #1
• Fix/readthedocs build by @ori-kron-wis in #3
• feat(models): add GIMVI and Stereoscope with SpatialBaseModel integration by @ori-kron-wis in #4
• fix(bugs): correct ct_weight key lookup in RNADeconv and y.type crash in JVAE gene-label dispersion by @ori-kron-wis in #5
• chore: remove dead code and fix dependency declarations by @ori-kron-wis in #6
• chore: rename package from spatialvi-tools to scviva-tools by @ori-kron-wis in #7
• Adding Tangram after converted to torch by @ori-kron-wis in #9
• feat: generalize ResolVIPredictiveMixin → SpatialPredictiveMixin; add SCVIVA predictive tests and DE tests by @ori-kron-wis in #13
• feat: Harreman by @ori-kron-wis in #14
• update DestVI_tutorial.ipynb by @ori-kron-wis in #15
• fix: revision of CCC by @ori-kron-wis in #16

Full Changelog: https://github.com/YosefLab/scviva-tools/commits/v0.1.4