refactor: repo reorganization into context/ structure

[aRustyDev]

Summary

• Removes legacy/ (2,067 files), .todo/ (792 files), components/ (721 files), and unused scaffold dirs — content previously migrated or no longer needed
• Adds context/ as the canonical home for skills, agents, commands, hooks, rules, and plugins
• Adds context/.context/ for research/reference material (claude-cookbooks, context-engineering-intro, etc.)
• Adds assets/ (sounds, mustache templates), build/ (output targets), settings/ (editor configs), .beads/ (interaction tracking)
• Adds .gitattributes and AGENTS.md

Test plan

• Verify context/skills/ contains all expected skills
• Verify legacy/, .todo/, components/, .templates/, tools/, mcp/ are fully removed
• Verify build/, settings/, assets/ scaffolding is present
• Spot-check that no content was lost (skills in context/skills/ match former components/skills/)

🤖 Generated with Claude Code

[socket-security]

Review the following changes in direct dependencies. Learn more about Socket for GitHub.

Diff	Package	Supply Chain Security	Vulnerability	Quality	Maintenance	License
	npm/​hono@​4.8.3
	npm/​@​modelcontextprotocol/​sdk@​1.13.1
	npm/​vi-fetch@​0.8.0
	npm/​just-pick@​4.2.0
	npm/​@​cloudflare/​vitest-pool-workers@​0.8.53
	npm/​vitest@​3.2.4
	pypi/​aiohttp@​3.13.1
	npm/​@​types/​node@​22.17.0 ⏵ 20.19.30	+1
	npm/​@​types/​node@​22.17.0 ⏵ 24.0.10	+1
	npm/​@​types/​node@​22.17.0 ⏵ 25.1.0	+1		+1
	npm/​@​vitest/​ui@​3.2.4
	npm/​workers-mcp@​0.0.13
	npm/​@​octokit/​rest@​20.1.2
	npm/​@​octokit/​auth-app@​7.2.2
	npm/​postgres@​3.4.7
	npm/​octokit@​5.0.3
	npm/​probot@​13.4.7
	npm/​@​octokit/​webhooks@​13.9.1
	npm/​typescript@​5.9.2 ⏵ 5.8.3
	npm/​typescript@​5.9.2 ⏵ 5.9.3			+1
	npm/​wrangler@​3.114.17
	npm/​wrangler@​4.24.3
	npm/​@​cloudflare/​workers-oauth-provider@​0.0.5
	npm/​hono@​4.11.7
	npm/​zod@​3.25.67
	npm/​agents@​0.0.100
	npm/​playwright@​1.58.1
	pypi/​aiobotocore@​3.1.1
	pypi/​aiohappyeyeballs@​2.6.1
	npm/​@​sentry/​cloudflare@​9.35.0
	pypi/​ag-ui-protocol@​0.1.8

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[socket-security]

Warning

Review the following alerts detected in dependencies.

According to your organization's Security Policy, it is recommended to resolve "Warn" alerts. Learn more about Socket for GitHub.

Action	Severity	Alert  (click "▶" to expand/collapse)
Warn		Obfuscated code: npm ioredis is 96.0% likely obfuscated Confidence: 0.96 Location: Package overview From: ? → npm/probot@13.4.7 → npm/ioredis@5.9.2 ℹ Read more on: This package | This alert | What is obfuscated code? Next steps: Take a moment to review the security alert above. Review the linked package source code to understand the potential risk. Ensure the package is not malicious before proceeding. If you're unsure how to proceed, reach out to your security team or ask the Socket team for help at support@socket.dev. Suggestion: Packages should not obfuscate their code. Consider not using packages with obfuscated code. Mark the package as acceptable risk. To ignore this alert only in this pull request, reply with the comment @SocketSecurity ignore npm/ioredis@5.9.2. You can also ignore all packages with @SocketSecurity ignore-all. To ignore an alert for all future pull requests, use Socket's Dashboard to change the triage state of this alert.
Warn		Obfuscated code: npm markdown-it is 91.0% likely obfuscated Confidence: 0.91 Location: Package overview From: context/.context/context-engineering-intro/use-cases/mcp-server/package-lock.json → npm/workers-mcp@0.0.13 → npm/markdown-it@14.1.0 ℹ Read more on: This package | This alert | What is obfuscated code? Next steps: Take a moment to review the security alert above. Review the linked package source code to understand the potential risk. Ensure the package is not malicious before proceeding. If you're unsure how to proceed, reach out to your security team or ask the Socket team for help at support@socket.dev. Suggestion: Packages should not obfuscate their code. Consider not using packages with obfuscated code. Mark the package as acceptable risk. To ignore this alert only in this pull request, reply with the comment @SocketSecurity ignore npm/markdown-it@14.1.0. You can also ignore all packages with @SocketSecurity ignore-all. To ignore an alert for all future pull requests, use Socket's Dashboard to change the triage state of this alert.
Warn		Obfuscated code: npm vite is 91.0% likely obfuscated Confidence: 0.91 Location: Package overview From: context/.context/context-engineering-intro/use-cases/mcp-server/package-lock.json → npm/vitest@3.2.4 → npm/vite@7.0.4 ℹ Read more on: This package | This alert | What is obfuscated code? Next steps: Take a moment to review the security alert above. Review the linked package source code to understand the potential risk. Ensure the package is not malicious before proceeding. If you're unsure how to proceed, reach out to your security team or ask the Socket team for help at support@socket.dev. Suggestion: Packages should not obfuscate their code. Consider not using packages with obfuscated code. Mark the package as acceptable risk. To ignore this alert only in this pull request, reply with the comment @SocketSecurity ignore npm/vite@7.0.4. You can also ignore all packages with @SocketSecurity ignore-all. To ignore an alert for all future pull requests, use Socket's Dashboard to change the triage state of this alert.

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