R-package: Calculation of haplotype blocks and libraries
This is the github repository for your R-package HaploBlocker. A paper on HaploBlocker has been published in Genetics (https://www.genetics.org/content/early/2019/05/31/genetics.119.302283)
For further questions (torsten.pook@uni-goettingen.de)
For explanation on the usage we refer to our user manual. The wiki is currently not equivilant (https://github.com/tpook92/HaploBlocker/wiki) - its just a couple of figure and not top priority as the user manual (Guidelines_to_HaploBlocker) should do.
HaploBlocker has been officially been published in Genetics (https://www.genetics.org/content/early/2019/05/31/genetics.119.302283)
A frozen version of the current package has been added in "Genetics_submission_version"
Min_majorblock is now automatically reduced in case the current parametrization would lead to a empty blocklist // haplotype library
Removed typo in plot_block
Support usage of vcf and pedmap files as input for genetic datasets
Creating of a window dataset (block_windowdataset). Block structure more similar to traditional haplotype block methods (set start/end points etc.)
Improvement to documentation (Guidelines_to_HaploBlocker)
Hotfix in block_dataset_construction
New features: selection signature detection (bEHH, iHH)
Improved computing time: (parallel computing, skipping unnecessary steps for large scale datasets)
Minor updates to RandomFieldsUtils: 0.4.0+ now required (available at CRAN)
Initial release