Added test case for serialized (pickled) batch reader fragments for SAM #124
+1,569
−1,435
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Added regression tests reproducing a bug where unpickled batch reader fragments had separate scanner instances sharing a file-like Python object instance that would cause issues when trying to materialize the fragments. @nvictus has a PR with the fix - once that's merged I will rebase on
mainand the Python tests should pass.