Skip to content

Fix broken links after removing multiscale and chunked tutorials #90

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
merged 1 commit into from
Dec 4, 2024
Merged

Fix broken links after removing multiscale and chunked tutorials #90

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 1 addition & 1 deletion docs/tutorials/setup_acquisition/configure.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -65,7 +65,7 @@ config.video[0].camera.settings.pixel_type = acquire.SampleType.U16
## Configure `Storage`
`Storage` objects have 2 attributes, `settings`, a `StorageProperties` object, and an optional attribute `identifier`, which is an instance of the `DeviceIdentifier` class described above.

`StorageProperties` has 2 attributes `external_metadata_json` and `filename` which are strings of the filename or filetree of the output metadata in JSON format and image data in whatever format corresponds to the selected storage device, respectively. `first_frame_id` is an integer ID that corresponds to the first frame of the current acquisition and is typically 0. `pixel_scale_um` is the camera pixel size in microns. `acquisition_dimensions` is a list of `StorageDimension`, one for each acquisition dimension, ordered from fastest changing to slowest changing. For more information on using the `StorageDimension` class, check out [Chunking Data for Zarr Storage](../zarr/chunked.md). `enable_multiscale` is a boolean used to specify if the data should be saved as an image pyramid. See the [Multiscale tutorial](../zarr/multiscale.md) for more information.
`StorageProperties` has 2 attributes `external_metadata_json` and `filename` which are strings of the filename or filetree of the output metadata in JSON format and image data in whatever format corresponds to the selected storage device, respectively. `first_frame_id` is an integer ID that corresponds to the first frame of the current acquisition and is typically 0. `pixel_scale_um` is the camera pixel size in microns. `acquisition_dimensions` is a list of `StorageDimension`, one for each acquisition dimension, ordered from fastest changing to slowest changing. `enable_multiscale` is a boolean used to specify if the data should be saved as an image pyramid.

We'll specify the name of the output image file below.

Expand Down
2 changes: 1 addition & 1 deletion docs/tutorials/zarr/compressed.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -63,7 +63,7 @@ import zarr
compressed = zarr.open(config.video[0].storage.settings.filename)
```

We'll print some of the data properties to illustrate how the data was compressed. Since we have not enabled [multiscale](multiscale.md) output, `out.zarr` will only have one top level array`"0"`.
We'll print some of the data properties to illustrate how the data was compressed. Since we have not enabled multiscale output, `out.zarr` will only have one top level array`"0"`.


```python
Expand Down