This repository is intended to process miRNA fastqs into a counts matrix.
Steps:
1. conda create --name mirge3
2. conda activate mirge3
3. conda install -c bioconda mirge3
4. git clone https://github.com/adamcatto/MicroRNAProcessor.git
5. cd MicroRNAProcessor
6. [Move all your fastq files to ./fastq]
7. [Edit ./config.yaml to whatever parameters you need to change]
8. python run.py