When interaction column is present, the createNetwork() function does not extract the gene name anymore.
However, in some situations, as example when the enrichment is done using Ensembl ID, the gene name could be useful.
Suggestion:
- Adding parameter
geneName=TRUE to createNetwork() function.
The update can be tested with data(parentalNapaVsDMSOEnrichment).
When interaction column is present, the
createNetwork()function does not extract the gene name anymore.However, in some situations, as example when the enrichment is done using Ensembl ID, the gene name could be useful.
Suggestion:
geneName=TRUEtocreateNetwork()function.The update can be tested with
data(parentalNapaVsDMSOEnrichment).