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adityaasunil/README.md

Hi πŸ‘‹, I'm Aditya Sunil Nair

Biochemistry student exploring Machine Learning, Medical Imaging & Bioinformatics

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πŸ’‘ About Me

  • πŸŽ“ BSc Biochemistry student with a growing love for AI in healthcare
  • 🧠 Currently working on MAE-ViT models on retinal fundus images
  • 🧬 Interested in bioinformatics, computational biology, and medical imaging
  • 🐍 Writing most of my code in Python, mostly in Jupyter / VS Code
  • 🎯 Goal: Build tools at the intersection of biology Γ— AI

πŸ§ͺ Featured Projects

πŸ”₯ MAESeg β€” Masked Autoencoder for Fundus Images

Custom MAE-ViT pipeline trained on retinal images (384Γ—384).

  • Patchify β†’ masking β†’ reconstruction with a custom PatchShuffle module
  • Uses PyTorch, Albumentations, and MPS acceleration on Mac
  • Visualizes masked inputs, reconstructions & attention behaviour
  • Next step: use the encoder for retinal vessel segmentation
  • Downstream Task: use the latent features with a U-Net style decoder and generate a binary mask

πŸ”— https://github.com/adityaasunil/MAESeg


πŸ› οΈ Tech Stack

🐍 Languages

πŸ“¦ Machine Learning & Data

🩺 Imaging & Preprocessing

🧰 Tools & Environment


🌱 Currently Learning

  • Deep Learning for medical imaging
  • Segmentation architectures (UNet-style models)
  • Fundamentals of bioinformatics & structural biology
  • Statistics & ML foundations for scientific research

🀝 Looking to Collaborate On

  • Medical imaging / retina analysis projects
  • ML projects in biology / healthcare
  • Open-source Python tools for data or imaging

πŸ’¬ Ask Me About

  • Anything related to Computation x Life Sciences

πŸ“Š GitHub Stats

Aditya's GitHub stats

Top Languages

πŸ“« Connect


⭐ Biology Γ— Code Γ— Curiosity

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  1. MAESeg MAESeg Public

    A retina vessel segmentation model which includes a self supervised MAE encoder ( frozen / unfrozen ) and a U-Net style decoder for segmentation.

    Jupyter Notebook 1