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Summary
This PR updates the Binder environment configuration for the Aeon Toolkit example notebooks.
The Binder build (pip install .[binder]) was failing to run many example notebooks due to missing packages. The binder extra in pyproject.toml only listed Jupyter-related packages and omitted several runtime dependencies required by the notebooks, leading to multiple ModuleNotFoundError crashes on launch.
What was wrong
Launching Binder resulted in import failures because the following packages were not installed:
matplotlib
seaborn
statsmodels
pyod
tensorflow
aeon
The base Binder image (jupyter/scipy-notebook:python-3.11) already includes numpy, pandas, scipy, and scikit-learn, so those were intentionally not included.
What this PR changes
Added the missing notebook dependencies to the binder optional dependency group in pyproject.toml:
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Run pre-commit checks for all files
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Run all notebook example tests
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Fixes #307
Summary
This PR updates the Binder environment configuration for the Aeon Toolkit example notebooks.
The Binder build (
pip install .[binder]) was failing to run many example notebooks due to missing packages. Thebinderextra inpyproject.tomlonly listed Jupyter-related packages and omitted several runtime dependencies required by the notebooks, leading to multipleModuleNotFoundErrorcrashes on launch.What was wrong
Launching Binder resulted in import failures because the following packages were not installed:
The base Binder image (
jupyter/scipy-notebook:python-3.11) already includes numpy, pandas, scipy, and scikit-learn, so those were intentionally not included.What this PR changes
Added the missing notebook dependencies to the
binderoptional dependency group inpyproject.toml:matplotlib>=3.3.2seaborn>=0.11.0statsmodels>=0.12.1pyod>=1.1.3tensorflow>=2.14; python_version < "3.13"aeon