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Revisions

  • Rewrite wiki documentation for the 4.0.0 release Add dedicated pages for the pipeline overview, inputs and reference, consensus model, operations and troubleshooting, testing, and the developer guide, and add a sidebar for navigation. Update the CLI, output, merge and installation pages to reflect the current parameters, validation behavior, reference representation, degraded caller mode and resource settings.

    @alermol alermol committed Oct 19, 2026
    b69f069

  • Update wiki

    @alermol alermol committed Sep 4, 2026
    680fcd1

  • Added details on chunked pipe merge strategy

    @alermol alermol committed Sep 1, 2026
    94c6dca

  • Merge branch 'master' of https://github.com/alermol/ChoCallate.wiki

    @alermol alermol committed Aug 27, 2026
    284be8b

  • Update documentation

    @alermol alermol committed Aug 27, 2026
    49c1a2c

  • Updated Home (markdown)

    @alermol alermol committed Apr 25, 2026
    ded8205

  • Add docker instructions

    @alermol alermol committed Apr 25, 2026
    975d7fc

  • Update CLI-Reference.md

    @alermol alermol committed Apr 19, 2026
    b80f3d3

  • Updated Installing ChoCallate (markdown)

    @alermol alermol committed Apr 18, 2026
    2944e2e

  • Destroyed Development Roadmap (markdown)

    @alermol alermol committed Apr 17, 2026
    e746bc2

  • Updated CLI Reference (markdown)

    @alermol alermol committed Apr 16, 2026
    4ae1d6a

  • Update CLI-Reference.md

    @alermol alermol committed Apr 14, 2026
    957a8f6

  • Destroyed Troubleshooting (markdown)

    @alermol alermol committed Apr 14, 2026
    6d9b2f6

  • Updated Development Roadmap (markdown)

    @alermol alermol committed Apr 3, 2026
    105086c

  • Updated Development Roadmap (markdown)

    @alermol alermol committed Mar 27, 2026
    79320a6

  • Updated Development Roadmap (markdown)

    @alermol alermol committed Mar 27, 2026
    a5d10e5

  • Update CLI reference

    @alermol alermol committed Mar 26, 2026
    cff87e4

  • Add troubleshooting page

    @alermol alermol committed Mar 25, 2026
    cb6eb36

  • Upate development roadmap

    @alermol alermol committed Mar 25, 2026
    2fce1a7

  • Update development roadmap

    @alermol alermol committed Mar 25, 2026
    9ef5f33

  • Update development roadmap

    @alermol alermol committed Mar 25, 2026
    aca3469

  • Updated Output Structure (markdown)

    @alermol alermol committed Mar 25, 2026
    5210d33

  • Updated Output Structure (markdown)

    @alermol alermol committed Mar 25, 2026
    bccf853

  • Updated Output Structure (markdown)

    @alermol alermol committed Mar 25, 2026
    628ed90

  • Add output structure information

    @alermol alermol committed Mar 25, 2026
    57d6e48

  • Add information about reference genome index

    @alermol alermol committed Mar 25, 2026
    6c30986

  • Updated Output_Structure (markdown)

    @alermol alermol committed Mar 25, 2026
    160b35c

  • Updated CLI_Reference (markdown)

    @alermol alermol committed Mar 25, 2026
    89ff036

  • Add new chapters

    @alermol alermol committed Mar 25, 2026
    3c3f18e

  • Updated CLI_Reference (markdown)

    @alermol alermol committed Mar 25, 2026
    f38a5af