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Aligner api#98

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sebschmi merged 2 commits intoalgbio:mainfrom
jeeeesper:aligner-api
Nov 3, 2025
Merged

Aligner api#98
sebschmi merged 2 commits intoalgbio:mainfrom
jeeeesper:aligner-api

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@jeeeesper jeeeesper commented Sep 18, 2025

This moves ranges and memory limits to the individual align(...) call. That allows to reuse an Aligner, which in turn means that costs and other alignment strategy can be parsed / configured only once upfront.

This branch is rebased on dont-panic-on-extend, at least to avoid a clippy lint that would make the pipeline fail. So perhaps #90 should be merged first.

@jeeeesper jeeeesper force-pushed the aligner-api branch 2 times, most recently from 0e124fc to 03b9fef Compare September 18, 2025 08:26
This moves ranges and memory limits to align(...) call, but allows to configure and parse costs upfront.
@sebschmi sebschmi enabled auto-merge November 3, 2025 09:17
@sebschmi sebschmi merged commit d62291e into algbio:main Nov 3, 2025
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@jeeeesper jeeeesper deleted the aligner-api branch November 3, 2025 09:20
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2 participants