Feature/deepwiki clean history

.env.bak

@@ -0,0 +1,56 @@
+# Supabase Configuration
+SUPABASE_URL=https://ftjhmbbcuqjqmmbaymqb.supabase.co
+SUPABASE_SERVICE_ROLE_KEY=eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.eyJpc3MiOiJzdXBhYmFzZSIsInJlZiI6ImZ0amhtYmJjdXFqcW1tYmF5bXFiIiwicm9sZSI6InNlcnZpY2Vfcm9sZSIsImlhdCI6MTczODg1OTczNCwiZXhwIjoyMDU0NDM1NzM0fQ.ldT_p0Xn64S3OM5AR27-Iht27nUkbR9kGDyaJftPt-s
+SUPABASE_SERVICE_KEY=eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.eyJpc3MiOiJzdXBhYmFzZSIsInJlZiI6ImZ0amhtYmJjdXFqcW1tYmF5bXFiIiwicm9sZSI6InNlcnZpY2Vfcm9sZSIsImlhdCI6MTczODg1OTczNCwiZXhwIjoyMDU0NDM1NzM0fQ.ldT_p0Xn64S3OM5AR27-Iht27nUkbR9kGDyaJftPt-s
+PUBLIC_SUPABASE_ANON_KEY=eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.eyJpc3MiOiJzdXBhYmFzZSIsInJlZiI6ImZ0amhtYmJjdXFqcW1tYmF5bXFiIiwicm9sZSI6ImFub24iLCJpYXQiOjE3Mzg4NTk3MzQsImV4cCI6MjA1NDQzNTczNH0.coUpXWXWCuztUyaGSHx1-qfL1CG5wlVh3I33Rq6NMNI
+
+# Git Provider API Keys
+GITHUB_TOKEN=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
+GITHUB_CLIENT_SECRET=10194b2531c02ac08bc59fffceb6d41cfb9dfcf7
+GITHUB_CLIENT_ID=Iv23liXCJTHgiJ4JxPJS
+GITLAB_TOKEN=glpat-csSverTEaXb2mWEytVRL
+GITLAB_CLIENT_ID=e836c1ea79e1b1844d5e21b5fa95bcf1957a42d871bbceb01837af4f490c8ca8
+GITLAB_CLIENT_SECRET=gloas-7d19fccacd6a68292e29da246ccd4dca9d75f827293e717ecf12a32b096dbb5e
+GITLAB_REDIRECT_URI=http://localhost:3000/auth/callback
+
+# Agent API Keys
+ANTHROPIC_API_KEY=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
+OPENAI_API_KEY=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
+DEEPSEEK_API_KEY=sk-d513de3f650e4497b0b67d542b2ad190
+GOOGLE_API_KEY=AIzaSyAx5Mj6YtrgnivkxUGqzAi1h_QxTX0HNWQ
+OPENROUTER_API_KEY=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
+
+DEPENDENCY_SCAN_SEVERITY=high
+
+# GitHub MCP Configuration
+GITHUB_MCP_COMMAND=
+GITHUB_MCP_ARGS=
+GITHUB_USERNAME=
+
+# DeepWiki Configuration
+DEEPWIKI_API_URL=http://localhost:8001
+DEEPWIKI_API_KEY=dw-key-e48329b6c05b4a36a18d65af21ac3c2f
+DEEPWIKI_API_URL=http://localhost:8001
+
+# Cost Tracking
+COST_TRACKING_ENABLED=true
+COST_ALERT_THRESHOLD=50
+
+# Logging
+LOG_LEVEL=info
+LOG_FILE_PATH=logs/app.log
+
+# Environment
+NODE_ENV=development
+
+# Grafana Configuration
+GRAFANA_URL=https://alpsla.grafana.net
+GRAFANA_SUPABASE_ACCESS_TOKEN=glc_eyJvIjoiMTQxOTc1OCIsIm4iOiJzdXBhYmFzZV9pbnRlZ3JhdGlvbi1zdXBfdG9rZW4iLCJrIjoiMjNBS1RxM3hDOTcxZVdvME9VOVQ3MnpwIiwibSI6eyJyIjoidXMifX0=
+GRAFANA_ORG_ID=1
+
+# Supabase PostgreSQL Connection (for Grafana)
+POSTGRES_HOST=https://ftjhmbbcuqjqmmbaymqb.supabase.co
+POSTGRES_PORT=5432
+POSTGRES_DB=postgres
+POSTGRES_USER=postgres
+POSTGRES_PASSWORD=eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.eyJpc3MiOiJzdXBhYmFzZSIsInJlZiI6ImZ0amhtYmJjdXFqcW1tYmF5bXFiIiwicm9sZSI6InNlcnZpY2Vfcm9sZSIsImlhdCI6MTczODg1OTczNCwiZXhwIjoyMDU0NDM1NzM0fQ.ldT_p0Xn64S3OM5AR27-Iht27nUkbR9kGDyaJftPt-s  # Use your Supabase service role key here

.github/workflows/ci.yml

@@ -17,10 +17,18 @@ jobs:
       uses: actions/setup-node@v3
       with:
         node-version: '18.x'
-        cache: 'npm'
+        # Disable npm caching to avoid ENOWORKSPACES error
+        # cache: 'npm'
 
     - name: Install dependencies
-      run: npm ci
+      run: |
+        echo "Installing all dependencies including workspaces..."
+        npm install
+        echo "Verifying core package dependencies..."
+        cd packages/core
+        npm list axios || echo "axios not found"
+        npm list @kubernetes/client-node || echo "@kubernetes/client-node not found"
+        cd ../..
 
     - name: Create .env file
       run: |
@@ -47,10 +55,24 @@ jobs:
         EOF
 
     - name: Lint
-      run: npm run lint
+      run: npm run lint --no-workspaces
 
-    - name: Build
-      run: npm run build
+    - name: Build core package first
+      run: |
+        echo "Building core package first to ensure proper type exports..."
+        cd packages/core
+        echo "Installing core package dependencies explicitly..."
+        npm install
+        npm run build || (echo "Core build failed" && exit 1)
+        echo "Verifying core build output..."
+        ls -la dist/
+        ls -la dist/utils/ || echo "No utils directory"
+        ls -la dist/types/ || echo "No types directory"
+        ls -la dist/config/ || echo "No config directory"
+        cd ../..
+
+    - name: Build all other packages
+      run: npx turbo run build --filter='!@codequal/core'
 
     - name: Test
-      run: npm run test
+      run: npm run test --no-workspaces

.gitignore

@@ -1,5 +1,6 @@
 # Environment variables
 .env
+.env.*
 .env.local
 .env.development.local
 .env.test.local

README.md

@@ -1,98 +1,45 @@
 # CodeQual
 
-CodeQual is an intelligent code review system that analyzes pull requests, educates developers based on identified issues, and tracks individual and team growth over time.
+A comprehensive code quality analysis system powered by AI.
 
-## Overview
+## Directory Structure
 
-CodeQual uses a flexible, adaptive multi-agent architecture to provide:
+- `/scripts`: Core scripts for repository analysis and testing
+- `/reports`: Generated analysis reports (timestamped)
+- `/docs`: Documentation and guides
+- `/archive`: Archived files from previous versions
 
-- Code quality analysis
-- Security vulnerability detection
-- Performance optimization suggestions
-- Educational content tailored to developers
-- Skill tracking and professional growth insights
+## Getting Started
 
-## Features
-
-- **Two-Tier Analysis**: Choose between quick (1-3 minutes) or comprehensive (5-10 minutes) analysis
-- **Multi-Agent Architecture**: Uses several AI models to provide the best analysis for each context
-- **Repository Analysis Caching**: Stores deep repository analysis for efficient reuse
-- **Skills Tracking**: Monitors developer growth across various skill categories
-- **Visualization**: Grafana dashboards for insight visualization
-
-## Installation
-
-1. Clone the repository
-   ```bash
-   git clone https://github.com/your-username/codequal.git
-   cd codequal
-   ```
-
-2. Install dependencies
+1. Run a quick test to verify the integration is working:
    ```bash
-   npm install
+   ./scripts/quick_test.sh
    ```
 
-3. Set up environment variables
+2. Analyze a repository:
    ```bash
-   cp .env.sample .env
-   # Edit .env with your Supabase and API credentials
+   ./scripts/analyze_repository.sh <repository_url> [model_name]
    ```
-
-4. Set up the database
+   
+3. View the latest report:
    ```bash
-   ./scripts/make-scripts-executable.sh
-   ./scripts/migrate-database.sh
+   open ./reports/latest/comprehensive_analysis.md
    ```
 
-## Environment Variables
-
-CodeQual requires the following environment variables:
+## Documentation
 
-| Variable | Description | Required |
-|----------|-------------|----------|
-| SUPABASE_URL | URL for your Supabase project | Yes |
-| SUPABASE_SERVICE_ROLE_KEY | Service role key for Supabase | Yes |
-| PUBLIC_SUPABASE_ANON_KEY | Anonymous key for Supabase | No |
-| GITHUB_TOKEN | GitHub API token | No* |
-| OPENAI_API_KEY | OpenAI API key for GPT models | No* |
-| ANTHROPIC_API_KEY | Anthropic API key for Claude models | No* |
-| DEEPSEEK_API_KEY | DeepSeek API key | No* |
-| GEMINI_API_KEY | Google Gemini API key | No* |
+For detailed documentation, see:
 
-\* At least one model API key is required for functionality.
-
-For local development, create a `.env` file in the project root with these variables. For production, set them in your deployment environment.
-
-## Usage
-
-```bash
-# Start the CLI
-npm run cli
-
-# Run analysis on a PR
-codequal analyze-pr --repo owner/repo --pr 123 --mode quick
-```
+- [Repository Analysis Guide](./docs/guides/repository_analysis.md)
 
 ## Architecture
 
-The project uses a TypeScript monorepo structure with the following packages:
-
-- `agents`: AI agent integrations and orchestration
-- `cli`: Command-line interface
-- `core`: Core types and utilities
-- `database`: Database models and Supabase integration
-- `testing`: Testing utilities and test repositories
-- `ui`: User interface components
-
-## Contributing
-
-1. Fork the repository
-2. Create your feature branch (`git checkout -b feature/amazing-feature`)
-3. Commit your changes (`git commit -m 'Add some amazing feature'`)
-4. Push to the branch (`git push origin feature/amazing-feature`)
-5. Open a Pull Request
+CodeQual uses a multi-agent approach with fallback capabilities to analyze repositories across multiple dimensions:
 
-## License
+- Architecture
+- Code Quality
+- Security
+- Dependencies
+- Performance
 
-This project is licensed under the MIT License - see the LICENSE file for details.
+Each analysis produces a score from 1-10, which are combined to create an overall repository score.

apps/api/package.json

@@ -11,5 +11,12 @@
   "keywords": [],
   "author": "",
   "license": "ISC",
-  "description": ""
+  "description": "",
+  "dependencies": {
+    "axios": "^1.9.0",
+    "dotenv": "^16.5.0"
+  },
+  "devDependencies": {
+    "@types/dotenv": "^6.1.1"
+  }
 }

apps/api/src/pages/api/pr-review.ts

@@ -1,6 +1,6 @@
 import { NextApiRequest, NextApiResponse } from 'next';
-import { PRReviewService } from '@pr-reviewer/core/services/pr-review-service';
-import { DEFAULT_AGENTS } from '@pr-reviewer/core/config/agent-registry';
+import { PRReviewService } from '@codequal/core/services/pr-review-service';
+import { DEFAULT_AGENTS } from '@codequal/core/config/agent-registry';
 
 /**
  * API endpoint for PR review
@@ -44,8 +44,9 @@ export default async function handler(
       suggestions: result.combinedResult.suggestions.length,
       educational: result.combinedResult.educational?.length || 0
     });
-  } catch (error: any) {
+  } catch (error: unknown) {
     console.error('Error handling PR review request:', error);
-    return res.status(500).json({ error: error.message });
+    const errorMessage = error instanceof Error ? error.message : String(error);
+    return res.status(500).json({ error: errorMessage });
   }
 }

apps/web/package.json

@@ -11,5 +11,12 @@
   "keywords": [],
   "author": "",
   "license": "ISC",
-  "description": ""
+  "description": "",
+  "dependencies": {
+    "axios": "^1.9.0",
+    "dotenv": "^16.5.0"
+  },
+  "devDependencies": {
+    "@types/dotenv": "^6.1.1"
+  }
 }

apps/web/src/components/pr-review/pr-review-form.tsx

@@ -25,7 +25,7 @@ export function PRReviewForm() {
     }
 
     // GitHub or GitLab PR URL validation
-    const validUrl = /https:\/\/(github|gitlab)\.com\/[^\/]+\/[^\/]+(\/pull\/\d+|\/\-\/merge_requests\/\d+)/;
+    const validUrl = /https:\/\/(github|gitlab)\.com\/[^/]+\/[^/]+(\/pull\/\d+|\/merge_requests\/\d+)/;
     if (!validUrl.test(prUrl)) {
       setError('Invalid PR URL. Must be a GitHub or GitLab PR URL.');
       return;
@@ -65,8 +65,9 @@ export function PRReviewForm() {
 
       // Redirect to results page
       router.push(`/results/${result.prReviewId}`);
-    } catch (error: any) {
-      setError(error.message);
+    } catch (error: unknown) {
+      const errorMessage = error instanceof Error ? error.message : String(error);
+      setError(errorMessage);
     } finally {
       setIsSubmitting(false);
     }