Skip to content

UniqSketch 1.3.0

Latest

Choose a tag to compare

@hamidamz hamidamz released this 11 Jun 19:35

Features

  • comparesketch: added --auto to size the Bloom filter from an ntCard cardinality estimate of the reference set, fixing the load factor (bits per distinct k-mer) so the false-positive rate is the design value regardless of genome size.
  • comparesketch: added --auto-gsize to size the Bloom filter from the largest input genome (estimateMaxGenomeSize), removing the need to set --gsize manually.
  • comparesketch: added --fpr=F to set bits-per-element for a target Bloom-filter false-positive rate (e.g. --fpr 0.001 selects 29 bits/element).
  • The comparesketch false-positive rate can now be controlled precisely; the default (--gsize-based sizing) behavior is unchanged.