v0.8.1

What's Changed

• Leo update calc eyetracking by @leoscholl in #268
• add some get helper functions by @leoscholl in #259
• Add dataset classes mike nolan by @m-nolan in #187
• Update conf.py by @rcanfield2 in #300
• add accumulated log-likelihood (AccLLR) by @rcanfield2 in #249
• add quality to preproc docs by @leoscholl in #306
• update contributing.rst by @leoscholl in #307
• fix formatting by @leoscholl in #308
• add plot_ecog_map by @leoscholl in #305
• add trial average option by @leoscholl in #312
• Behavior metrics by @pavi-rajes in #311
• Add laser stim timing by @leoscholl in #315
• Leo add correlation plot by @leoscholl in #320
• Fix hand traj outliers by @rcanfield2 in #317
• Update analysis docstrings by @rcanfield2 in #310
• Leo update filter tests by @resatomo in #326
• update spatial map alpha by @leoscholl in #321
• Add lda by @sijia66 in #314
• add debug options to laser stim times by @leoscholl in #325
• Hand kinematics for non-mc experiments by @leoscholl in #328
• add opto signalpath by @leoscholl in #331
• correct both onset and offset times by @leoscholl in #329
• add wavelet time-frequency decomposition by @leoscholl in #330
• change search radius by @leoscholl in #332
• add plotting kwargs by @leoscholl in #333
• fix mock imports by @leoscholl in #338
• version bump by @leoscholl in #336
• update documentation by @leoscholl in #339
• add memory management utils by @leoscholl in #337
• accllr fixes by @leoscholl in #304
• update docs by @leoscholl in #343
• Refactor by @leoscholl in #344
• Fix get velo segs by @rcanfield2 in #350
• Add task rel dim calc files again after refactor by @rcanfield2 in #348
• Leo trials metrics 2 by @leoscholl in #351
• import inside functions by @leoscholl in #353
• add assertions to proc_single by @leoscholl in #352
• Fix pause bug by @leoscholl in #355
• Leo update get target locations by @leoscholl in #354
• Leo fix downsample by @leoscholl in #361
• add function to calculate local correlation map with a moving square kernel. by @rcanfield2 in #363
• Fix no event bug by @leoscholl in #357
• add concat trials function by @leoscholl in #366
• add test image by @leoscholl in #368
• improve color_trajectories by @leoscholl in #370
• Leo copy edges 2 by @leoscholl in #362
• Leo eyetracking by @leoscholl in #359
• spectrogram function with multitapers (pesaran lab code) by @resatomo in #358
• Changed AnalogPanel to DigiralPanel by @resatomo in #371
• speed up rotate data and nudge in all axes by @leoscholl in #376
• version bump by @leoscholl in #386
• Leo add rolling average by @leoscholl in #385
• Rounded numbers by @resatomo in #380
• Leo eyetracking poster functions by @leoscholl in #384
• Fixed import by @resatomo in #387
• Leo memory default by @leoscholl in #391
• fix docs by @leoscholl in #392
• Tomo neuropixel functions by @resatomo in #374
• udpate docs by @rcanfield2 in #394
• updates by @rcanfield2 in #395
• Leo kinematics and laser update by @leoscholl in #372
• Add movement error by @leoscholl in #389
• update docstrings by @leoscholl in #398
• Update conf.py by @rcanfield2 in #400
• Added dtype option in calc_mt_tfr by @resatomo in #403
• screenBadECoGchannels by @resatomo in #404
• Leo interp hotfix by @leoscholl in #406
• add aopy to pypi by @leoscholl in #402
• Update .readthedocs.yaml by @leoscholl in #407
• Update .readthedocs.yaml by @leoscholl in #408
• Update .readthedocs.yaml by @leoscholl in #409
• kilosort functions by @resatomo in #415
• change inter_barcode_interval by @resatomo in #414
• Calc waveforms from kilosort output data by @resatomo in #416
• Update base.py by @pavi-rajes in #418
• Modified get_first_last_times by @resatomo in #419
• Leo add db by @leoscholl in #410
• add db docs by @leoscholl in #430
• Get saccade labels by @resatomo in #428
• Changed code so that it remove bad trials in concatenating data across sessions by @resatomo in #429
• update rolling average by @leoscholl in #436
• remove str() from db.list_entry_details by @leoscholl in #439
• Update wrappers.py by @aolabNeuro in #440
• docs updates by @rcanfield2 in #442
• change criteria by @leoscholl in #435
• compute tuning significance by @rcanfield2 in #443
• update eye filtering by @leoscholl in #444
• add function to compute an array of RGB values that represent a gradient. by @rcanfield2 in #445
• update inits by @leoscholl in #449
• add prepare erp by @leoscholl in #450
• Update spectrograms by @leoscholl in #446
• swap erp axis by @leoscholl in #448
• Update conf.py by @rcanfield2 in #453
• spectrogram alignment by @leoscholl in #452
• add coherency function by @leoscholl in #447
• add more coherence notes by @leoscholl in #456
• add tabulate_kinematic_data by @leoscholl in #432
• add annotation by @leoscholl in #451
• always include eye closed mask by @leoscholl in #455
• fix erp tests by @leoscholl in #454
• tfcoh and tabulate_kinematics fixes by @leoscholl in #457
• Leo gradient plots by @leoscholl in #431
• add importlib_resources backport for python 3.8 and below by @sijia66 in #461
• Animate behavior by @leoscholl in #459
• Update requirements.txt by @katherineperks in #463
• fix docs by @leoscholl in #465
• Add trial definition function by @leoscholl in #470
• add helper fn for task codes by @leoscholl in #433
• add subplots with letter numbering by @sijia66 in #471
• Katherine update preproc for tablet (clean branch) by @katherineperks in #474
• fix visualization docs by @leoscholl in #466
• add options to sessions_by_trial by @leoscholl in #437
• updated doc figures by @leoscholl in #468
• add reset_color by @leoscholl in #482
• add eye closed mask to get_kinematics by @leoscholl in #480
• tabulate laser data by @leoscholl in #458
• add tabulate flash by @leoscholl in #481
• maybe load corrupted files by @leoscholl in #476
• add bad trials by @leoscholl in #467
• update mask_and_shift by @leoscholl in #485
• update boxplots by @leoscholl in #487
• Get conditioned trials per target by @resatomo in #484
• Movement onset by @resatomo in #483
• time_shuffling_helper_functions by @rcanfield2 in #478
• Katherine tabulate tracking task by @katherineperks in #462
• Process lfp from broadband by @leoscholl in #475
• maybe fix loading corrupted data by @leoscholl in #491
• Update to tabulate tracking task by @katherineperks in #497
• clarify bmi3d version by @leoscholl in #504
• add phase difference angle to calc_mt_tfcoh by @leoscholl in #492
• fix convert analog to digital scaling by @leoscholl in #511
• Update laser find_stim_times by @leoscholl in #499
• db decoder functions by @leoscholl in #506
• add default false to caching functions by @leoscholl in #494
• add t0 to plot_timeseries by @leoscholl in #512
• Leo update eye calibration by @leoscholl in #498
• Eye target calibration by @resatomo in #513
• add kwargs to load_chmap by @leoscholl in #514
• remove default filtering in get_interp_kinematics by @leoscholl in #509
• Leo fix docs and proc eye dazy by @leoscholl in #517
• add tabulate out by @leoscholl in #505
• Katherine tracking task analysis by @katherineperks in #516
• fix accllr p values by @leoscholl in #519
• add place_subplots by @leoscholl in #522
• Optical switch by @leoscholl in #528
• fix versioning by @leoscholl in #529
• add detect bad timepoints by @leoscholl in #526
• Katherine tracking task behavior by @katherineperks in #531
• add dbname option by @leoscholl in #532
• Katherine tracking task behavior by @katherineperks in #534
• Katherine tracking task analysis by @katherineperks in #525
• Update tracking task wrapper for tabulate by @katherineperks in #520
• tabulate ts segments by @leoscholl in #523
• saving neural data segments example by @leoscholl in #537
• Added low pass filtering and threshold by @resatomo in #539
• Changed so that target index could be aligned in the ascending order by @resatomo in #538
• update kinematics upsampling by @leoscholl in #540
• Get a confidence interval and compute overlap ratio between 2 confidence intervals by @resatomo in #544
• add channel option by @leoscholl in #545
• change calc_corr_over_distance inputs by @leoscholl in #521
• Fix tabulate ts channels by @leoscholl in #547
• speedup load_exp_data by @leoscholl in #541
• fix for mpl 3.9 by @leoscholl in #548
• fix bug in recreating random trial order of ref/dis freqs by @katherineperks in #546
• add summarize_entries by @leoscholl in #533
• add explicit dbname by @leoscholl in #552
• increase version compatibility by @leoscholl in #554
• Matt's github practice by @robsarti in #555
• add sequence name to db by @leoscholl in #556
• Matt's onehotencode function: Add function to db.py, Add file in _images by @robsarti in #557
• Katherine tracking task behavior by @katherineperks in #558
• Extract features by @leoscholl in #551
• Maintenance by @leoscholl in #562
• Filter function example: add example filter function to database_exam… by @robsarti in #564
• add reshape extract_lfp_features by @leoscholl in #565
• Katherine tracking task behavior by @katherineperks in #563
• db preproc by @leoscholl in #527
• plot_decoders by @leoscholl in #561
• add clim to spatial map by @leoscholl in #568
• fix db bug by @leoscholl in #567
• fix broken filters by @leoscholl in #560
• Fix db filter again by @leoscholl in #569
• rotate chmap by @leoscholl in #570
• update rounding by @leoscholl in #573
• add theta to place_subplots by @leoscholl in #574
• add dprime by @leoscholl in #576
• synchronize time series data by @resatomo in #572
• Fixed synchronization bugs by @resatomo in #578
• add metadata columns function by @leoscholl in #577
• destripe lfp batch by @resatomo in #580
• Update conf.py by @rcanfield2 in #581
• add color_targets by @leoscholl in #571
• Multiply matrix by huge data by @resatomo in #579
• overlay sulci by @leoscholl in #587
• plot xy scalebar by @leoscholl in #586
• np quality metric funcs and tests by @rcanfield2 in #584
• add np tabulate func and tests by @rcanfield2 in #582
• update docs by @rcanfield2 in #590
• Update postproc.rst by @rcanfield2 in #593
• generate updated figures for docs by @leoscholl in #595
• add latency calculations by @leoscholl in #589
• Updated loading functions by @resatomo in #585
• Neuropixel example notebook by @rcanfield2 in #596
• update by @rcanfield2 in #600
• Find index for a relevant saccade to look at the peripheral target from the center by @resatomo in #543
• add delay penalty to list of penalty codes by @katherineperks in #599
• add new install requirement by @katherineperks in #598
• Update cursor leave time func by @katherineperks in #602
• kinematic mappings by @leoscholl in #594
• cleanup by @leoscholl in #601
• Neuropixel example update markdown cells by @rcanfield2 in #604
• add coherence connectivity metrics by @leoscholl in #591
• update instructions by @leoscholl in #607

New Contributors

• @aolabNeuro made their first contribution in #440
• @katherineperks made their first contribution in #463
• @robsarti made their first contribution in #555

Full Changelog: v0.2...v0.8.1