Align pre-commit hooks to use passed filenames and remove internal git diff logic

[Standing-Man]

Bug description

Some pre-commit hooks (trailing-whitespace.sh, trailing-newline.sh, taplo.sh, binary-artifacts.sh) currently determine the staged file scope internally using git diff --cached, while also setting pass_filenames: false.

This differs from other hooks (e.g., markdownlint, shellcheck) that rely on filenames passed directly by pre-commit. Aligning these hooks to the same pattern would simplify the implementation and improve consistency.

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