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Pass header and cookie parameters to correct args in nectar::req_prepare (#84)#89

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copilot/fix-header-and-cookie-parameters
May 14, 2026
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Pass header and cookie parameters to correct args in nectar::req_prepare (#84)#89
jonthegeek merged 2 commits into
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copilot/fix-header-and-cookie-parameters

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Copilot AI commented May 14, 2026 •
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Header parameters were incorrectly routed to the body argument of nectar::req_prepare(); cookie parameters were not handled at all.

Template changes

  • inst/templates/010-prepare.R: Add header = list() and cookie = list() to the generated {api_abbr}_req_prepare() signature and forward them to nectar::req_prepare()
  • inst/templates/paths.R: Replace body = list({{params_header}}) with header = list({{params_header}}) and add a cookie = list({{params_cookie}}) section

Code generation changes

  • R/generate_pkg-paths.R: Compute params_cookie from params_cookie_raw in .generate_paths_files() (mirroring existing params_query/params_header handling) and include it in the template data

Before / after (generated req_ function)

# Before
req_myapi_get_thing <- function(x_auth_token, session_id, q) {
  myapi_req_prepare(
    path = "/things",
    method = "get",
    query = list(q = q),
    body = list(x_auth_token = x_auth_token)  # ❌ wrong arg; cookie ignored
  )
}

# After
req_myapi_get_thing <- function(x_auth_token, session_id, q) {
  myapi_req_prepare(
    path = "/things",
    method = "get",
    query = list(q = q),
    header = list(x_auth_token = x_auth_token),  # ✅
    cookie = list(session_id = session_id)        # ✅
  )
}

Fixtures & tests

  • Updated guru and trello 010-prepare.R fixtures to include header/cookie params
  • Added fixture _fixtures/header_cookie/paths-things-search_things.R and a new rendering test tagged #84

Copilot AI linked an issue May 14, 2026 that may be closed by this pull request
Header and cookie parameters #84
Closed
Copilot AI changed the title [WIP] Fix header and cookie parameters in API requests Pass header and cookie parameters to correct args in nectar::req_prepare (#84) May 14, 2026
Copilot AI requested a review from jonthegeek May 14, 2026 11:27
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{qcthat} Report: User Acceptance

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This report was generated by this GitHub Actions run.

Last updated: 2026-05-14 11:36:53 UTC

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{qcthat} Reports

PR-Associated Issues

✅ A qcthat issue test matrix with 1 milestone, 1 issue, and 1 test 
└─█─Milestone: v0.5.0 Parameter docs and type checks (1 issue, 1 test)
  └─📥─Feature 84: Header and cookie parameters
    └─✅─.generate_paths_file() renders header and cookie params correctly (#84)
# Issue state: 📥 = open, ☑️ = closed (completed), ⛔ = closed (won't fix)
# Test disposition: ✅ = passed, ❌ = failed, 🚫 = skipped
✅ All tests passed

🟢 All issues have at least one test

Completed Issues

✅ A qcthat issue test matrix with 3 milestones, 11 issues, and 10 tests 
├─█─Milestone: v0.1.0 (5 issues, 0 tests)
│ ├─☑️─Feature 35: Create testthat/setup.R
│ │ └─(no tests)
│ ├─☑️─Bug 26: pkg_agent() errors in default usecase
│ │ └─(no tests)
│ ├─☑️─Feature 17: Auto-generate auth for api_key (query or header)
│ │ └─(no tests)
│ ├─☑️─Feature 16: Generate tests for basic call function
│ │ └─(no tests)
│ └─☑️─Feature 15: Auto-generate apis.guru caller from rapid
│   └─(no tests)
├─█─Milestone: v0.4.0 (3 issues, 0 tests)
│ ├─☑️─Infrastructure 52: Eliminate dplyr dependency
│ │ └─(no tests)
│ ├─☑️─Infrastructure 51: Eliminate lubridate dependency
│ │ └─(no tests)
│ └─☑️─Infrastructure 10: Config 
│   └─(no tests)
└─█─Milestone: v0.5.0 Parameter docs and type checks (3 issues, 10 tests)
  ├─☑️─Feature 85: Parameter type documentation
  │ └─✅─.compile_param_class_descriptions() uses class names (#85)
  ├─☑️─Feature 65: Path file per endpoint
  │ ├─✅─.generate_paths() returns empty character for empty paths (#65)
  │ ├─✅─.generate_paths() calls correct templates for guru (#65)
  │ ├─✅─.generate_paths() writes correct templates for guru (#65)
  │ ├─✅─.generate_paths() calls correct templates for fec (#65)
  │ ├─✅─.generate_paths() writes correct paths.R for fec (#65)
  │ ├─✅─.generate_paths() writes correct paths.R for trello (#65)
  │ ├─✅─.generate_shared_params() returns file path for no-security API (#65)
  │ ├─✅─.generate_shared_params() writes correct content for no-security API (#65)
  │ └─✅─.generate_shared_params() writes security params for API with security (#65)
  └─☑️─Bug 46: Speed Up Paths
    └─(no tests)
# Issue state: 📥 = open, ☑️ = closed (completed), ⛔ = closed (won't fix)
# Test disposition: ✅ = passed, ❌ = failed, 🚫 = skipped
✅ All tests passed

⭕ 9 issues lack tests

🙈 2 issues with label "qcthat-nocov" were ignored

This report was generated by this GitHub Actions run.

Last updated: 2026-05-14 11:36:55 UTC

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rstudioapi 0.18.0 2026-01-16 [1] RSPM

rversions 3.0.0 2025-10-09 [1] RSPM

rvest 1.0.5 2025-08-29 [1] RSPM

S7 0.2.2 2026-04-22 [1] RSPM

sass 0.4.10 2025-04-11 [1] RSPM

selectr 0.5-1 2025-12-17 [1] RSPM

sessioninfo 1.2.3 2025-02-05 [1] RSPM

shiny 1.13.0 2026-02-20 [1] RSPM

snakecase 0.11.1 2023-08-27 [1] RSPM

sourcetools 0.1.7-2 2026-03-28 [1] RSPM

spatial 7.3-18 2025-01-01 [2] CRAN (R 4.6.0)

splines 4.6.0 2026-04-24 [2] local

stats * 4.6.0 2026-04-24 [2] local

stats4 4.6.0 2026-04-24 [2] local

stbl 0.3.0.9000 2026-05-14 [1] Github (wranglezone/stbl@5a38548)

stringi 1.8.7 2025-03-27 [1] RSPM

stringr 1.6.0 2025-11-04 [1] RSPM

survival 3.8-6 2026-01-16 [2] CRAN (R 4.6.0)

sys 3.4.3 2024-10-04 [1] RSPM

systemfonts 1.3.2 2026-03-05 [1] RSPM

tcltk 4.6.0 2026-04-24 [2] local

testthat 3.3.2 2026-01-11 [1] RSPM

textshaping 1.0.5 2026-03-06 [1] RSPM

tibble 3.3.1 2026-01-11 [1] RSPM

tibblify 0.4.1.9000 2026-05-14 [1] Github (wranglezone/tibblify@d600ef9)

tidyr 1.3.2 2025-12-19 [1] RSPM

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xtable 1.8-8 2026-02-22 [1] RSPM

yaml 2.3.12 2025-12-10 [1] RSPM

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[1] /usr/local/lib/R/site-library

[2] /usr/local/lib/R/library

[3] /__w/_temp/Library

  • ── Packages attached to the search path.

──────────────────────────────────────────────────────────────────────────────

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🌐 PR pkgdown deployed

This report was generated by this GitHub Actions run.

Last updated: 2026-05-14 11:37:07 UTC

Session Info ─ Session info ───────────────────────────────────────────────────────────────

setting value

version R version 4.6.0 (2026-04-24)

os Ubuntu 24.04.4 LTS

system x86_64, linux-gnu

ui X11

language (EN)

collate en_US.UTF-8

ctype en_US.UTF-8

tz UTC

date 2026-05-14

pandoc 3.1.3 @ /usr/bin/pandoc

quarto NA

─ Packages ───────────────────────────────────────────────────────────────────

package * version date (UTC) lib source

askpass 1.2.1 2024-10-04 [1] RSPM

astgrepr 0.1.1 2025-06-07 [1] RSPM

backports 1.5.1 2026-04-03 [1] RSPM

base * 4.6.0 2026-04-24 [2] local

base64enc 0.1-6 2026-02-02 [1] RSPM

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boot 1.3-32 2025-08-29 [2] CRAN (R 4.6.0)

brew 1.0-10 2023-12-16 [1] RSPM

brio 1.1.5 2024-04-24 [1] RSPM

bslib 0.10.0 2026-01-26 [1] RSPM

cachem 1.1.0 2024-05-16 [1] RSPM

callr 3.7.6 2024-03-25 [1] RSPM

checkmate 2.3.4 2026-02-03 [1] RSPM

class 7.3-23 2025-01-01 [2] CRAN (R 4.6.0)

cli 3.6.6 2026-04-09 [1] RSPM

clipr 0.8.0 2022-02-22 [1] RSPM

cluster 2.1.8.2 2026-02-05 [2] CRAN (R 4.6.0)

codetools 0.2-20 2024-03-31 [2] CRAN (R 4.6.0)

commonmark 2.0.0 2025-07-07 [1] RSPM

compiler 4.6.0 2026-04-24 [2] local

covr 3.6.5 2025-11-09 [1] RSPM

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credentials 2.0.3 2025-09-12 [1] RSPM

curl 7.1.0 2026-04-22 [1] RSPM

datasets * 4.6.0 2026-04-24 [2] local

desc 1.4.3 2023-12-10 [1] RSPM

devtools 2.5.2 2026-04-30 [1] RSPM

diffobj 0.3.6 2025-04-21 [1] RSPM

digest 0.6.39 2025-11-19 [1] RSPM

docopt 0.7.2 2025-03-25 [1] RSPM (R 4.6.0)

downlit 0.4.5 2025-11-14 [1] RSPM

dplyr 1.2.1 2026-04-03 [1] RSPM

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evaluate 1.0.5 2025-08-27 [1] RSPM

fansi 1.0.7 2025-11-19 [1] RSPM

fastmap 1.2.0 2024-05-15 [1] RSPM

fontawesome 0.5.3 2024-11-16 [1] RSPM

foreign 0.8-91 2026-01-29 [2] CRAN (R 4.6.0)

fs 2.1.0 2026-04-18 [1] RSPM

generics 0.1.4 2025-05-09 [1] RSPM

gert 2.3.1 2026-01-11 [1] RSPM

gh 1.5.0 2025-05-26 [1] RSPM

git2r 0.36.2 2025-03-29 [1] RSPM

gitcreds 0.1.2 2022-09-08 [1] RSPM

glue 1.8.1 2026-04-17 [1] RSPM

graphics * 4.6.0 2026-04-24 [2] local

grDevices * 4.6.0 2026-04-24 [2] local

grid 4.6.0 2026-04-24 [2] local

here 1.0.2 2025-09-15 [1] RSPM

highr 0.12 2026-03-06 [1] RSPM

hms 1.1.4 2025-10-17 [1] RSPM

htmltools 0.5.9 2025-12-04 [1] RSPM

htmlwidgets 1.6.4 2023-12-06 [1] RSPM

httptest2 1.2.2 2025-11-16 [1] RSPM

httpuv 1.6.17 2026-03-18 [1] RSPM

httr 1.4.8 2026-02-13 [1] RSPM

httr2 1.2.2 2025-12-08 [1] RSPM

ini 0.3.1 2018-05-20 [1] RSPM

janitor 2.2.1 2024-12-22 [1] RSPM

jquerylib 0.1.4 2021-04-26 [1] RSPM

jsonlite 2.0.0 2025-03-27 [1] RSPM

KernSmooth 2.23-26 2025-01-01 [2] CRAN (R 4.6.0)

knitr 1.51 2025-12-20 [1] RSPM

later 1.4.8 2026-03-05 [1] RSPM

lattice 0.22-9 2026-02-09 [2] CRAN (R 4.6.0)

lifecycle 1.0.5 2026-01-08 [1] RSPM

littler 0.3.23 2026-04-12 [1] RSPM (R 4.6.0)

lubridate 1.9.5 2026-02-04 [1] RSPM

magick 2.9.1 2026-02-28 [1] RSPM

magrittr 2.0.5 2026-04-04 [1] RSPM

MASS 7.3-65 2025-02-28 [2] CRAN (R 4.6.0)

Matrix 1.7-5 2026-03-21 [2] CRAN (R 4.6.0)

memoise 2.0.1 2021-11-26 [1] RSPM

methods * 4.6.0 2026-04-24 [2] local

mgcv 1.9-4 2025-11-07 [2] CRAN (R 4.6.0)

mime 0.13 2025-03-17 [1] RSPM

miniUI 0.1.2 2025-04-17 [1] RSPM

nectar 0.0.0.9007 2026-05-14 [1] Github (api2r/nectar@9c6c19d)

nlme 3.1-169 2026-03-27 [2] CRAN (R 4.6.0)

nnet 7.3-20 2025-01-01 [2] CRAN (R 4.6.0)

openssl 2.4.0 2026-04-15 [1] RSPM

otel 0.2.0 2025-08-29 [1] RSPM

pak 0.9.5 2026-04-27 [1] RSPM (R 4.6.0)

parallel 4.6.0 2026-04-24 [2] local

pillar 1.11.1 2025-09-17 [1] RSPM

pkgbuild 1.4.8 2025-05-26 [1] RSPM

pkgconfig 2.0.3 2019-09-22 [1] RSPM

pkgdown 2.2.0 2025-11-06 [1] RSPM

pkgload 1.5.2 2026-04-22 [1] RSPM

praise 1.0.0 2015-08-11 [1] RSPM

prettyunits 1.2.0 2023-09-24 [1] RSPM

processx 3.9.0 2026-04-22 [1] RSPM

profvis 0.4.0 2024-09-20 [1] RSPM

promises 1.5.0 2025-11-01 [1] RSPM

ps 1.9.3 2026-04-20 [1] RSPM

purrr 1.2.2 2026-04-10 [1] RSPM

qcthat 1.1.2.9000 2026-05-14 [1] Github (Gilead-BioStats/qcthat@c39ba3d)

quarto 1.5.1 2025-09-04 [1] RSPM

R6 2.6.1 2025-02-15 [1] RSPM

ragg 1.5.2 2026-03-23 [1] RSPM

rapid 0.0.0.9003 2026-05-14 [1] Github (api2r/rapid@499d903)

rappdirs 0.3.4 2026-01-17 [1] RSPM

rcmdcheck 1.4.0 2021-09-27 [1] RSPM

Rcpp 1.1.1-1.1 2026-04-24 [1] RSPM

rex 1.2.2 2026-03-28 [1] RSPM

rlang 1.2.0 2026-04-06 [1] RSPM

rmarkdown 2.31 2026-03-26 [1] RSPM

roxygen2 8.0.0 2026-05-01 [1] RSPM

rpart 4.1.27 2026-03-27 [2] CRAN (R 4.6.0)

rprojroot 2.1.1 2025-08-26 [1] RSPM

rrapply 1.2.8 2025-11-25 [1] RSPM

rstudioapi 0.18.0 2026-01-16 [1] RSPM

rversions 3.0.0 2025-10-09 [1] RSPM

rvest 1.0.5 2025-08-29 [1] RSPM

S7 0.2.2 2026-04-22 [1] RSPM

sass 0.4.10 2025-04-11 [1] RSPM

selectr 0.5-1 2025-12-17 [1] RSPM

sessioninfo 1.2.3 2025-02-05 [1] RSPM

shiny 1.13.0 2026-02-20 [1] RSPM

snakecase 0.11.1 2023-08-27 [1] RSPM

sourcetools 0.1.7-2 2026-03-28 [1] RSPM

spatial 7.3-18 2025-01-01 [2] CRAN (R 4.6.0)

splines 4.6.0 2026-04-24 [2] local

stats * 4.6.0 2026-04-24 [2] local

stats4 4.6.0 2026-04-24 [2] local

stbl 0.3.0.9000 2026-05-14 [1] Github (wranglezone/stbl@5a38548)

stringi 1.8.7 2025-03-27 [1] RSPM

stringr 1.6.0 2025-11-04 [1] RSPM

survival 3.8-6 2026-01-16 [2] CRAN (R 4.6.0)

sys 3.4.3 2024-10-04 [1] RSPM

systemfonts 1.3.2 2026-03-05 [1] RSPM

tcltk 4.6.0 2026-04-24 [2] local

testthat 3.3.2 2026-01-11 [1] RSPM

textshaping 1.0.5 2026-03-06 [1] RSPM

tibble 3.3.1 2026-01-11 [1] RSPM

tibblify 0.4.1.9000 2026-05-14 [1] Github (wranglezone/tibblify@d600ef9)

tidyr 1.3.2 2025-12-19 [1] RSPM

tidyselect 1.2.1 2024-03-11 [1] RSPM

timechange 0.4.0 2026-01-29 [1] RSPM

tinytex 0.59 2026-03-28 [1] RSPM

tools 4.6.0 2026-04-24 [2] local

urlchecker 1.0.1 2021-11-30 [1] RSPM

usethis 3.2.1 2025-09-06 [1] RSPM

utf8 1.2.6 2025-06-08 [1] RSPM

utils * 4.6.0 2026-04-24 [2] local

vctrs 0.7.3 2026-04-11 [1] RSPM

waldo 0.6.2 2025-07-11 [1] RSPM

whisker 0.4.1 2022-12-05 [1] RSPM

withr 3.0.2 2024-10-28 [1] RSPM

xfun 0.57 2026-03-20 [1] RSPM

xml2 1.5.2 2026-01-17 [1] RSPM

xopen 1.0.1 2024-04-25 [1] RSPM

xtable 1.8-8 2026-02-22 [1] RSPM

yaml 2.3.12 2025-12-10 [1] RSPM

zip 2.3.3 2025-05-13 [1] RSPM

[1] /usr/local/lib/R/site-library

[2] /usr/local/lib/R/library

[3] /__w/_temp/Library

  • ── Packages attached to the search path.

──────────────────────────────────────────────────────────────────────────────

@jonthegeek jonthegeek marked this pull request as ready for review May 14, 2026 11:37
@jonthegeek jonthegeek enabled auto-merge (squash) May 14, 2026 11:37
@jonthegeek jonthegeek merged commit 00f709e into main May 14, 2026
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@jonthegeek jonthegeek deleted the copilot/fix-header-and-cookie-parameters branch May 14, 2026 11:38
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Header and cookie parameters

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