Do we want to filter out multiallelics in the initial preprocessing steps. Presumably some tools might be able to use them? In some organisms, there are a large number of multiallelics.
More generally, do we want to filter early in the pipelines, or late? My suspicion is that filtering late will allow some tools to take advantage of extra information?
Do we want to filter out multiallelics in the initial preprocessing steps. Presumably some tools might be able to use them? In some organisms, there are a large number of multiallelics.
More generally, do we want to filter early in the pipelines, or late? My suspicion is that filtering late will allow some tools to take advantage of extra information?