v1.1.1

MarFERReT protein sequence reference library change log

v1.1.1

Improvements to MarFERReT assembly scripts

• Incorporated inclusion/exclusion flag into build procedure to integrate QC process
• Added check to see if translated protein sequence already exists
• Changed scripts to pull database version from input metadata file
• Streamlined the internal file naming process
  • Important output files are now generated with the same version ID as the input metadata.csv
• The /data/source_seqs/ directory for input source sequences is now pre-generated

Added test data set and demo tutorial

• Added a small data set to test the MarFERRet build process under /versions/v1_demo/
  • Seven-entry metadata.csv file (MarFERReT.v1_demo.metadata.csv)
  • Compressed tarball with small set of FASTA sequences (demo_mini_entries.tar.gz)
  • Demo tutorial script (marferret.v1_demo.tutorial.sh)

Zenodo repository release

• Input metadata files and output files generated by the assemble_marferret.sh, pfam_annotate.sh, and build_diamond_db.sh MarFERReT build scripts have been deposited in a Zenodo repository linked to the v1.1.1 codebase: https://doi.org/10.5281/zenodo.10553848

v1.1.0

This release is associated with the v1.1 release of the MarFERReT reference library:
https://zenodo.org/records/10170983