v0.10.0

What's Changed

• Quality of life improvements by @AroneyS in #86
  • Rename --aviary-[gtdbtk, checkm2]-dir args to --aviary-[gtdbtk, checkm2]-db
  • Add database env variables to ibis build (SingleM, CheckM2, GTDBtk)
  • Minimise standard workflow arguments
  • Removed --no-genomes argument and made that the default
  • Set max size to 50Gbp unless single-assembly
• Add Aviary build to Ibis build by @AroneyS in #89
• Snakefile improvements by @AroneyS in #93
• Update dependencies by @AroneyS in #94
• Improve genome loading by @AroneyS in #95
• Change name to binchicken by @AroneyS in #96

Breaking changes

• Name change to binchicken
• --coassemble-output now refers to --output dir from coassemble command instead of referring to the coassemble subfolder within that output dir
• Rename --aviary-[gtdbtk, checkm2]-dir args to --aviary-[gtdbtk, checkm2]-db
• Removed --no-genomes argument and made that the default
• Set max size to 50Gbp unless single-assembly

Full Changelog: v0.9.6...v0.10.0