Pattern Similarity

Generic code for reporting Tanimoto/Jaccard similarity between two pattern vectors (binary/weighted)

1. Option with predefined patterns (-p) with binary similarity

java -jar PatternSimilarity.jar -f CSV -q data/file1.fp -t data/file2.fp -p data/pattern.fp -B

Tanimoto: 1.00

2. Option with predefined patterns (-p) with weighted similarity

java -jar PatternSimilarity.jar -f CSV -q data/file1.fp -t data/file2.fp -p data/pattern.fp

Tanimoto: 0.75

3. Option with binary similarity

java -jar PatternSimilarity.jar -f CSV -q data/file1.fp -t data/file2.fp -B

Tanimoto: 0.38

4. Option with weighted similarity

java -jar PatternSimilarity.jar -f CSV -q data/file1.fp -t data/file2.fp

Tanimoto: 0.40