Reports

[ODiogoSilva]

This PR adds the backend functionality that allows the JSON report data generated by flowcraft pipelines to be provided to the web application for report rendering and visualization.

The data and format of the JSON report data have been discussed and specified here and is now part of the developer docs.

[codecov-io]

Codecov Report

Merging #127 into dev will decrease coverage by 3.54%.
The diff coverage is 8.66%.

@@            Coverage Diff             @@
##              dev     #127      +/-   ##
==========================================
- Coverage   42.37%   38.82%   -3.55%     
==========================================
  Files          53       58       +5     
  Lines        4928     5502     +574     
==========================================
+ Hits         2088     2136      +48     
- Misses       2840     3366     +526

Impacted Files	Coverage Δ
flowcraft/generator/header_skeleton.py	100% <ø> (ø)	⬆️
flowcraft/templates/mapping2json.py	0% <ø> (ø)	⬆️
flowcraft/generator/components/metagenomics.py	100% <ø> (ø)	⬆️
flowcraft/generator/components/annotation.py	78.12% <ø> (ø)	⬆️
flowcraft/generator/components/phylogeny.py	100% <ø> (ø)	⬆️
flowcraft/templates/mashscreen2json.py	0% <ø> (ø)	⬆️
flowcraft/generator/components/mapping.py	100% <ø> (ø)	⬆️
flowcraft/templates/skesa.py	0% <ø> (ø)	⬆️
flowcraft/generator/components/typing.py	100% <ø> (ø)	⬆️
flowcraft/templates/trimmomatic.py	0% <0%> (ø)	⬆️
... and 25 more

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