Home

Welcome to the AutoTube wiki!

This wiki will guide you through the set up of AutoTube. AutoTube is a software that allows automatic quantifications of vessel area, width, skeleton length and the number of branching points of vascular networks in tissues and/or in in vitro assays. The description of the software can be found in our paper: Javier A. Montoya-Zegarra, Erica Russo, Peter Runge, Maria Jadha, Ann-Helen Willrodt, Szymon Stoma, Simon F. Nørrelykke, Michael Detmar, and Cornelia Halin. AutoTube: a novel software for the automated morphometric analysis of vascular networks in tissues to be published in the Journal of Angiogenesis.

If you use AutoTube, we appreciate it if you cite our paper: @article{einstein, author = "Javier A. Montoya-Zegarra and Erica Russo and Peter Runge and Maria Jadhav and Ann-Helen Willrodt and Szymon Stoma and Simon F. Nørrelykke and Michael Detmar and Cornelia Halin", title = "AutoTube: a novel software for the automated morphometric analysis of vascular networks in tissues", journal = "Journal of Angiogenesis", volume = "X", number = "X", pages = "X--X", year = "2018", DOI = "http://dx.doi.org/X/X"}

We have also created a manual, which is available as a PDF file from the following link.

To continue using AutoTube, please refer to the following two links:

1. Running AutoTube from source code
2. Graphical User Interface (GUI)