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v3.2.0 - Wroshyr

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@rfm-targa rfm-targa released this 29 Sep 10:58
· 356 commits to master since this release
v3.2.0
9e99b7b

New version of the SchemaEvaluator module. The updated version fixes several issues related to outdated dependencies that led to errors in the previous version. The new version also includes new features and components. Read the docs page to know more about the latest version of the SchemaEvaluator module.

Additional changes

  • Updated the link to the UniProt FTP used by the UniprotFinder module.
  • Added the .fas file extension to the list of file extensions accepted by chewBBACA. chewBBACA accepts genome assemblies and external schemas with FASTA files that use any of the following file extensions: .fasta, .fna, .ffn, .fa and .fas. The FASTA files created by chewBBACA use the .fasta extension.
  • Fixed an issue in the PrepExternalSchema module where it would only detect FASTA files if they ended with the .fasta extension.
  • Added the --size-filter parameter to the PrepExternalSchema module to define if the adaptation process should filter out alleles based on the minimum length and size threshold values.
  • Added the --output-novel parameter to the AlleleCall module. If this parameter is used, the AlleleCall module creates a FASTA file with the novel alleles inferred during the allele calling. This file is created even if the --no-inferred parameter is used and the novel alleles are not added to the schema.
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