v3.4.1

• Changed the -max_target_seqs value used by the select_representatives function to the square of the number of potential new representative alleles or to a minimum of 100. This change tries to fix an issue where BLASTp would not report the self-alignment for some alleles because it reached the limit of the number of alignments to report before reporting all self-alignments (e.g. for very large datasets, the number of potential new representatives may lead to a number of alignments that exceeds the value passed to -max_target_seqs).