Add in Bfrescoxpro package

[jared321]

PR Self-review

• Carefully review all changes made in branch
• Check that all new tox tasks pass and are running as expected
  • Intentionally broke tests and confirmed correct reporting of error including nonzero error code
  • Intentionally broke style and confirmed correct reporting of error including nonzero error code
• Install package directly from local clone & test
  • Started clean (i.e., removed bin, build, and meson intermediate folders)
  • macOS with GCC 15.2.0/OpenMP 4.5 (homebrew) and Open MPI 5.0.8 (homebrew)
  • Reviewed build log carefully. Correct MPI and OpenMP flags. Correct macOS/ARM64 link flags.
  • Confirm MPI+OpenMPI but no external LAPACK or core
  • Confirm correct content in build_info.csv
  • Confirm that test suite can be run on installation through Python interpreter
  • Check information and print_information
• Install package directly from local clone in editable mode & test
  • Started clean (i.e., removed bin, build, and meson intermediate folders)
  • macOS with GCC 15.2.0/OpenMP 4.5 (homebrew) and Open MPI 5.0.8 (homebrew)
  • Reviewed build log carefully. Correct MPI and OpenMP flags. Correct macOS/ARM64 link flags.
  • Confirm MPI+OpenMP but no external LAPACK or core
  • Confirm correct content in build_info.csv
  • Confirm that test suite can be run on installation through Python interpreter
  • Check information and print_information
  • Intentionally break test in local clone and see that test immediately fails to confirm editable mode
• Build package from source distribution manually, install, & test
  • Started clean (i.e., removed bin, build, and meson intermediate folders)
  • macOS with GCC 15.2.0/OpenMP 4.5 (homebrew) and Open MPI 5.0.8 (homebrew)
  • Confirm correct, minimal contents including LICENSE
  • Reviewed package and install logs carefully. Correct MPI and OpenMP flags. Correct macOS/ARM64 link flags.
  • Confirm MPI+OpenMP but to external LAPACK or core
  • Confirm correct content in build_info.csv
  • Confirm that test suite can be run on installation through Python interpreter
  • Check information and print_information
  • Repeated on cluster using Intel OneAPI 2023.2.1/OpenMP 5.0-revision1 (modules) and Intel Open MPI 4.1.6 (modules)
• Check that version information is created correctly (v0.0.0 since no tags yet)
  • In wheel and source distribution names
  • python -m pydoc bfrescoxpro
  • bfrescox.__version__
  • python -m pip list and python -m pip show bfrescoxpro
• On one machine check that BFRESCOX_* env vars are working as expected
  • Started clean (i.e., removed bin, build, and meson intermediate folders)
  • See that all three possible values induce the expected behavior. My compilers all support OpenMP, so I can't check BFRESCOX_USE_OMP=auto and =enabled completely. Failed on bad feature value.
  • Check build_info.csv manually
  • Check information and print_information output manually
  • Confirm that test suite can be run on installation through Python interpreter
  • No need to check Lapack and Corex functionality since not official
• Review new content in rendered RTD docs in PR
• Intentionally break code/tests to confirm that new job & action fail as expected
  • testing and code coverage measurements on broken test
  • flake8 on bad style
• Spot check logs in new job & action
• Download new code coverage artifact and review
• Check merging of two package coverage results in CodeCov
• Confirm all actions passing

[codecov-commenter]

Codecov Report

❌ Patch coverage is 78.09524% with 23 lines in your changes missing coverage. Please review.
✅ Project coverage is 58.75%. Comparing base (ea348cd) to head (afe173b).

Files with missing lines	Patch %	Lines
...scoxpro_pypkg/src/bfrescoxpro/print_information.py	61.11%	21 Missing ⚠️
bfrescoxpro_pypkg/src/bfrescoxpro/information.py	85.71%	1 Missing ⚠️
...frescoxpro_pypkg/src/bfrescoxpro/run_simulation.py	75.00%	1 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##             main      #14      +/-   ##
==========================================
+ Coverage   49.31%   58.75%   +9.43%     
==========================================
  Files          10       17       +7     
  Lines         219      320     +101     
==========================================
+ Hits          108      188      +80     
- Misses        111      132      +21     

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