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@FerriolCalvet FerriolCalvet commented Jul 24, 2024

  • positive selection side plots (omega, oncodrivefml, indels)
  • remove double workflow structure
  • separate omega config to an independent file

@FerriolCalvet FerriolCalvet linked an issue Jul 24, 2024 that may be closed by this pull request
6 tasks
- remove check_max function
-  update definition of maximum resources
- update validation to nf-schema
- update lung config
- remove multiqc max email size
@FerriolCalvet FerriolCalvet changed the title add positive selection side plots add positive selection side plots + nextflow version to 24.04 Jul 25, 2024
- add improvements to config
- change max resources indication
- fix (again) bug in plot_maf
- only if all methods available run the plot
- split the plotting script into each individual method
@FerriolCalvet FerriolCalvet merged commit e1ab40a into dev Jul 29, 2024
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Remove all the uses of check_max function and apply new nextflow functionality to restrict resource usage. add positive selection explanatory plots

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