add all sections working to date #34
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Features: - Added the signatures subworkflow - Simple non-properly normalized mutation matrix
Features: - Generate matrix with WGS counts in mut. profile module. - Fix order of contexts_formatted_sigprofiler - Update oncodrivefml container - Add step to concatenate all sigprofiler mutation matrices
Container is not ready for the tool to run in a specific mode creating profiles per sample
Feature: - No new feature just adding some lines of code that were not committed. - From this commit onwards it should be working with the version in remote.
Features: - Adjust mutabilities by the number of mutations per gene. - Tested in small test. Testing in duplexome. - Added another annotated panel for the mutabilities to work, both in test and test_duplexome. - Modify mutabilities code for it to work with the adjustment. - Modify mutabilities module. Pending: - Revise mutabilities module output
Features: - Fix max cpus and max memory - Add str type to CHROM column. - Add new resources tag for the compute mutability module.
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