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@FerriolCalvet FerriolCalvet commented May 1, 2024

add all params to nextflow_schema

  • update some param names to be more informative
  • change container for filter_batch step to pandas
  • update Ensembl VEP to version 111
  • update selection of assembly in modules.config
    • it now fully depends on the genome that is being used for annotating the mutations in VEP

- update some param names to be more informative
- change container for filter_batch step to pandas
@FerriolCalvet FerriolCalvet linked an issue May 1, 2024 that may be closed by this pull request
FerriolCalvet and others added 4 commits May 6, 2024 10:23
- update also nextflow_schema.json
- Improve the container/conda version selection based on params
- Update modules.config organization of assembly selection.
@FerriolCalvet FerriolCalvet merged commit b96188a into main May 6, 2024
@FerriolCalvet FerriolCalvet deleted the dev/64-improve-config branch May 17, 2024 12:53
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Add all required parameters to the nextflow_schema.json file

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