Unable to install w/ pip: dependency conflict

[marianaurera]

Hi! I'm running into an issue when installing the package. See details below. Can you help me with this please? I'm using pip to install it: pip install oncodrivefml

`Defaulting to user installation because normal site-packages is not writeable
Collecting oncodrivefml
Using cached oncodrivefml-2.4.0.tar.gz (606 kB)
Preparing metadata (setup.py) ... done
Collecting ago==0.0.93
Using cached ago-0.0.93.tar.gz (3.3 kB)
Preparing metadata (setup.py) ... done
Collecting bgcache==0.1
Using cached bgcache-0.1.tar.gz (3.0 kB)
Preparing metadata (setup.py) ... done
Collecting bgconfig
Using cached bgconfig-0.10.tar.gz (3.6 kB)
Preparing metadata (setup.py) ... done
Collecting bgdata>=2.0.3
Using cached bgdata-2.0.4-py3-none-any.whl (27 kB)
Collecting bglogs==0.6
Using cached bglogs-0.6.tar.gz (4.9 kB)
Preparing metadata (setup.py) ... done
Collecting bgparsers==0.10
Using cached bgparsers-0.10-py2.py3-none-any.whl (21 kB)
Collecting bgreference==0.6
Using cached bgreference-0.6.tar.gz (3.0 kB)
Preparing metadata (setup.py) ... done
Collecting bgsignature==0.2
Using cached bgsignature-0.2.tar.gz (11 kB)
Preparing metadata (setup.py) ... done
Collecting bokeh<2,>=1.4.0
Using cached bokeh-1.4.0.tar.gz (32.4 MB)
Preparing metadata (setup.py) ... done
Requirement already satisfied: click>=7.0 in /usr/lib/python3/dist-packages (from oncodrivefml) (8.0.3)
Collecting cython==0.29.15
Using cached Cython-0.29.15-py2.py3-none-any.whl (968 kB)
Collecting intervaltree>=3.0.2
Using cached intervaltree-3.1.0.tar.gz (32 kB)
Preparing metadata (setup.py) ... done
Requirement already satisfied: matplotlib>=3.1 in /home/gptmu/.local/lib/python3.10/site-packages (from oncodrivefml) (3.9.2)
Requirement already satisfied: numpy>=1.18.1 in /usr/local/lib/python3.10/dist-packages (from oncodrivefml) (2.0.2)
Requirement already satisfied: pandas>=1.0.1 in /home/gptmu/.local/lib/python3.10/site-packages (from oncodrivefml) (1.5.3)
Collecting pytabix==0.0.2
Using cached pytabix-0.0.2.tar.gz (46 kB)
Preparing metadata (setup.py) ... done
Requirement already satisfied: scipy>=1.4.1 in /usr/local/lib/python3.10/dist-packages (from oncodrivefml) (1.14.1)
Collecting statsmodels==0.11.0
Using cached statsmodels-0.11.0.tar.gz (15.4 MB)
Installing build dependencies ... error
error: subprocess-exited-with-error

× pip subprocess to install build dependencies did not run successfully.
│ exit code: 1
╰─> [23 lines of output]
Ignoring numpy: markers 'python_version == "3.5"' don't match your environment
Ignoring numpy: markers 'python_version == "3.6"' don't match your environment
Collecting setuptools
Using cached setuptools-75.6.0-py3-none-any.whl (1.2 MB)
Collecting wheel
Using cached wheel-0.45.1-py3-none-any.whl (72 kB)
Collecting cython>=0.29.14
Using cached Cython-3.0.11-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (3.6 MB)
Collecting numpy==1.14.5
Using cached numpy-1.14.5.zip (4.9 MB)
Preparing metadata (setup.py): started
Preparing metadata (setup.py): finished with status 'done'
ERROR: Cannot install numpy==1.14.5 and numpy==1.17.5 because these package versions have conflicting dependencies.

  The conflict is caused by:
      The user requested numpy==1.14.5
      The user requested numpy==1.17.5
  
  To fix this you could try to:
  1. loosen the range of package versions you've specified
  2. remove package versions to allow pip attempt to solve the dependency conflict
  
  ERROR: ResolutionImpossible: for help visit https://pip.pypa.io/en/latest/topics/dependency-resolution/#dealing-with-dependency-conflicts
  [end of output]

note: This error originates from a subprocess, and is likely not a problem with pip.
error: subprocess-exited-with-error

× pip subprocess to install build dependencies did not run successfully.
│ exit code: 1
╰─> See above for output.

note: This error originates from a subprocess, and is likely not a problem with pip.`

[chris-zen]

Hi @marianaurera , could you please try again with the latest release 2.5.0