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Version 3.5.7

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@danifranco danifranco released this 08 Jan 18:31
· 1113 commits to master since this release
v3.5.7
0d9dae4
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Learn about vigilant mode.

Major:

  • Rebuilt CartoCell tutorial organization and update notebooks.
  • Update templates to follow the same configuration as in the notebooks, which achieve good results in the example datasets.

Minor:

  • Improve robustness loading 3D images
  • Make SurfaceArea only requested in 3D images
  • Update example dataset paths to raw and label in most cases to be consistent

Bugs fixed:

  • Fix bug during TEST.REDUCE_MEMORY
  • Fix errors while loading H5 nested data
  • Solve bug when loading Zarr/H5 files into memory for training
  • Fix missing import in some workflows
  • Changes in instance segmentation's statistic calculation:
    • Add diplib library as a dependency to calculate surface area more precisely and enable elongation for 3D which is P2A in diplib
    • Correct centroid coordinates
    • Make SurfaceArea only requested in 3D images to accelerate the process
  • Fix bug in the filtering while predicting by chunks

Full Changelog: v3.5.6...v3.5.7

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