Improve the documentation in for DIANN + quantms and modules parameters

[ypriverol]

In the following PR #660 we add some warning and blocking of parameters of specific params + modules in DIANN. However, this has triggered another issue about the warning messages we are throwing when a parameter not supported by a module is provided.

[modules/local/diann/insilico_library_generation/main.nf](https://github.com/bigbio/quantms/pull/660/files/95277e87473acb7634a1179c72d3ae8cc13ab299#diff-e545d403b6c6355b3378001ec24e1108bee6358ee505c5a70b993395bcc3c6c0)
    blocked.sort { a -> -a.length() }.each { flag ->
        def flagPattern = '(?<=^|\\s)' + java.util.regex.Pattern.quote(flag) + '(?=\\s|\$)(\\s+(?!-{1,2}[a-zA-Z])\\S+)*'
        if (args =~ flagPattern) {
            log.warn "DIA-NN: '${flag}' is managed by the pipeline for INSILICO_LIBRARY_GENERATION and will be stripped."

#660 (comment)

I think the solution is to have a main page in the documentation with all the parameters in DIANN that can be provided to each module and which ones do not make sense; and the reason. We can update the pipeline and warning message pointing to that page.

[ypriverol]

Related to this original issue #640 and this PR #660