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Update sdrf-pipelines to 0.1.4#89

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ypriverol merged 2 commits into
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claude/upgrade-sdrf-pipelines-rB7bC
May 8, 2026
Merged

Update sdrf-pipelines to 0.1.4#89
ypriverol merged 2 commits into
devfrom
claude/upgrade-sdrf-pipelines-rB7bC

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Description

Updates the sdrf-pipelines container dependency from version 0.1.3 to 0.1.4 across the pipeline.

Changes

  • Updated SDRF_PARSING process container image to use sdrf-pipelines:0.1.4--pyhdfd78af_0 for both Singularity and Docker
  • Updated CHANGELOG.md to reflect the dependency version change

Motivation

This update brings in the latest improvements and fixes from the sdrf-pipelines project.

PR checklist

  • This comment contains a description of changes (with reason).
  • CHANGELOG.md is updated.

Test Plan

Existing tests should pass with the updated container version. The change is a straightforward dependency update with no modifications to pipeline logic.

https://claude.ai/code/session_01K8s9C1vc5CNHT8zzR9BSUf

Bump the SDRF_PARSING module container from 0.1.3 to 0.1.4 and expand
the 2.1.0 CHANGELOG dependencies table to reflect the cumulative deps
changes since 2.0.0 (sdrf-pipelines, quantms-utils, qpx).

https://claude.ai/code/session_01K8s9C1vc5CNHT8zzR9BSUf
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coderabbitai Bot commented May 7, 2026

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github-actions Bot commented May 7, 2026

nf-core pipelines lint overall result: Passed ✅ ⚠️

Posted for pipeline commit 520b231

+| ✅ 108 tests passed       |+
#| ❔  18 tests were ignored |#
#| ❔   1 tests had warnings |#
!| ❗   4 tests had warnings |!
Details

❗ Test warnings:

  • files_exist - File not found: conf/igenomes.config
  • files_exist - File not found: conf/igenomes_ignored.config
  • files_exist - File not found: .github/workflows/awstest.yml
  • files_exist - File not found: .github/workflows/awsfulltest.yml

❔ Tests ignored:

❔ Tests fixed:

✅ Tests passed:

Run details

  • nf-core/tools version 4.0.2
  • Run at 2026-05-07 17:22:45

@ypriverol ypriverol linked an issue May 7, 2026 that may be closed by this pull request
@ypriverol ypriverol merged commit 1918a71 into dev May 8, 2026
26 of 36 checks passed
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Workstation DIANN vs. quantmsdiann, a small benchmark

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