Fix CI: single-line commands, bundled test data

[ypriverol]

Fixes the CI workflow by using single-line nextflow commands (no backslash continuations that break in GitHub Actions).

[coderabbitai]

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✨ Finishing Touches

🧪 Generate unit tests (beta)

• Create PR with unit tests
• Commit unit tests in branch feature/dat-bypass-workflow

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[codacy-production]

Up to standards ✅

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