SpliceCraft v1.0.44

Bug fixes

• The sequence viewer no longer jumps to the wrong place after you rotate the origin. Clicking a base (or arrowing) while the map was rotated scrolled the panel to a stale, un-rotated position — the highlighted base was correct but the view "dipped" away from it. Following the cursor is now rotation-aware, so the click lands where you're pointing.
• Primers on plasmids assembled in the Constructor now show their sequence + flap instead of a plain bar. When you built a plasmid via the Constructor's Traditional, Gibson, or Golden Braid / MoClo tabs, the primer_bind features carried in from your parts (e.g. a domestication primer) rendered like any other feature. They now keep their primer sequence through assembly, so they draw with the bound bases inline and the 5′ flap (enzyme tail / overhang) hanging off — and on a circular plasmid the flap wraps the origin as it should.

New features

• Any primer_bind feature now reads as a primer — inline bases, and a flap when known. Whatever the origin (Constructor, Synthesis, an imported GenBank/.dna file, or a primer you add to the map), a primer_bind feature now shows its bound bases inline in the bar — drawn from the template when the full primer sequence isn't recorded — instead of a featureless block. When the full primer is known, its 5′ flap renders too.